Variant report

Variant	rs4870404
Chromosome Location	chr6:150579896-150579897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150571087..150575708-chr6:150576058..150580847,8	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11155716	0.96[ASN][1000 genomes]
rs12662622	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17079521	0.96[ASN][1000 genomes]
rs2880661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3734729	0.90[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs3734730	0.91[ASN][1000 genomes]
rs4870392	0.91[ASN][1000 genomes]
rs6557376	0.80[CHB][hapmap]
rs6936990	0.80[CHB][hapmap]
rs7749005	0.80[CHB][hapmap]
rs9322253	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9322254	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322255	0.88[ASN][1000 genomes]
rs9371362	0.90[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs9371830	1.00[CEU][hapmap];0.80[CHB][hapmap]
rs9371831	0.80[CHB][hapmap]
rs9371833	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9371834	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9371843	1.00[AMR][1000 genomes]
rs9371844	0.80[CHB][hapmap]
rs9371852	0.90[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs9383732	0.80[CHB][hapmap];1.00[AMR][1000 genomes]
rs9383739	0.91[ASN][1000 genomes]
rs9383740	0.91[ASN][1000 genomes]
rs9383747	0.98[ASN][1000 genomes]
rs9384259	0.80[CHB][hapmap]
rs9384261	0.80[CHB][hapmap]
rs9384262	0.80[CHB][hapmap];1.00[AMR][1000 genomes]
rs9384264	0.80[CHB][hapmap]
rs9384270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9384299	0.96[ASN][1000 genomes]
rs9397229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9397234	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9397764	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9397777	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9397780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150574800-150590800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:150576400-150580400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:150577400-150585200	Weak transcription	Right Ventricle	heart
4	chr6:150577400-150585400	Weak transcription	Left Ventricle	heart
5	chr6:150577400-150588200	Weak transcription	Psoas Muscle	Psoas
6	chr6:150577600-150580400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:150577800-150580000	Enhancers	HMEC	breast
8	chr6:150578000-150589000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:150578200-150580600	Weak transcription	Fetal Heart	heart
10	chr6:150578400-150588000	Weak transcription	NH-A	brain
11	chr6:150579200-150587600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:150579400-150584200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:150579400-150587200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:150579400-150587200	Weak transcription	NHEK	skin
15	chr6:150579600-150580000	ZNF genes & repeats	K562	blood
16	chr6:150579600-150580600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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