Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150557817..150561475-chr6:150561596..150566291,6	K562	blood:
2	chr6:150555928..150559365-chr6:150559823..150562005,4	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11155716	0.96[ASN][1000 genomes]
rs17079521	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2880661	0.93[ASN][1000 genomes]
rs3734729	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734730	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4870392	1.00[ASN][1000 genomes]
rs4870404	0.91[ASN][1000 genomes]
rs9322254	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9322255	0.84[ASN][1000 genomes]
rs9371362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383740	1.00[ASN][1000 genomes]
rs9383747	0.93[ASN][1000 genomes]
rs9384270	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9384299	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9397229	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9397234	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9397764	1.00[ASN][1000 genomes]
rs9397777	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9397780	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150555200-150561400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:150557600-150568800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:150559800-150565000	Weak transcription	NHEK	skin
4	chr6:150559800-150565000	Weak transcription	Osteobl	bone
5	chr6:150559800-150565400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:150559800-150568800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:150560000-150562200	Weak transcription	Psoas Muscle	Psoas
8	chr6:150560000-150563400	Weak transcription	Fetal Heart	heart
9	chr6:150560000-150565400	Weak transcription	K562	blood
10	chr6:150560200-150568400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:150560200-150571000	Weak transcription	HMEC	breast
12	chr6:150560400-150565000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:150560400-150565200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:150560400-150565200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:150560400-150565400	Weak transcription	Fetal Brain Male	brain

Quick Search: