Variant report

Variant	rs9397780
Chromosome Location	chr6:150567114-150567115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150566857..150569459-chr6:150586928..150589779,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11155716	0.93[ASN][1000 genomes]
rs12662622	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17079521	0.93[ASN][1000 genomes]
rs2880661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3734729	0.98[ASN][1000 genomes]
rs3734730	0.98[ASN][1000 genomes]
rs4870392	0.98[ASN][1000 genomes]
rs4870404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322253	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9322254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322255	0.82[ASN][1000 genomes]
rs9371362	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9371833	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9371834	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9371843	1.00[AMR][1000 genomes]
rs9371852	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9383732	1.00[AMR][1000 genomes]
rs9383739	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9383740	0.98[ASN][1000 genomes]
rs9383747	0.91[ASN][1000 genomes]
rs9384262	1.00[AMR][1000 genomes]
rs9384270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384299	0.93[ASN][1000 genomes]
rs9397229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9397234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9397764	0.98[ASN][1000 genomes]
rs9397777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150557600-150568800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:150559800-150568800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150560200-150568400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:150560200-150571000	Weak transcription	HMEC	breast
5	chr6:150562600-150571000	Weak transcription	Psoas Muscle	Psoas
6	chr6:150565400-150567200	Enhancers	Fetal Brain Female	brain
7	chr6:150565400-150569200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:150565600-150568400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:150565600-150568400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:150565600-150568800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:150565600-150568800	Weak transcription	NHEK	skin
12	chr6:150566200-150568000	Enhancers	Osteobl	bone
13	chr6:150566200-150571800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:150566800-150567800	Weak transcription	Fetal Brain Male	brain
15	chr6:150566800-150568600	Weak transcription	K562	blood
16	chr6:150566800-150572200	Weak transcription	Right Ventricle	heart
17	chr6:150567000-150571600	Weak transcription	Fetal Heart	heart

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