Variant report

Variant	rs9371843
Chromosome Location	chr6:150554829-150554830
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150548351..150551820-chr6:150552592..150556737,3	K562	blood:
2	chr6:150544515..150547384-chr6:150552847..150554983,2	K562	blood:
3	chr6:150553894..150555591-chr6:150556253..150558267,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12662622	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2880661	1.00[AMR][1000 genomes]
rs3734729	0.89[CHB][hapmap]
rs4870404	1.00[AMR][1000 genomes]
rs6557375	0.86[ASN][1000 genomes]
rs6557376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6922326	0.93[ASN][1000 genomes]
rs6936990	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7741317	0.92[JPT][hapmap]
rs7749005	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs926930	0.84[JPT][hapmap]
rs9322253	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9322254	0.89[CHB][hapmap];1.00[AMR][1000 genomes]
rs9371362	0.89[CHB][hapmap]
rs9371830	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9371831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9371833	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9371834	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9371844	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs9371852	0.89[CHB][hapmap]
rs9383732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9384259	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9384261	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9384262	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9384264	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs9384270	1.00[AMR][1000 genomes]
rs9397206	0.92[JPT][hapmap]
rs9397229	1.00[AMR][1000 genomes]
rs9397234	1.00[AMR][1000 genomes]
rs9397777	0.89[CHB][hapmap];1.00[AMR][1000 genomes]
rs9397780	1.00[AMR][1000 genomes]
rs9478585	0.84[JPT][hapmap]
rs9885696	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150549800-150556400	Weak transcription	Left Ventricle	heart
2	chr6:150550000-150556600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:150550000-150558600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:150550800-150555400	Enhancers	HMEC	breast
5	chr6:150551000-150555000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:150551200-150558800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:150552400-150557600	Weak transcription	Right Atrium	heart
8	chr6:150552400-150558600	Weak transcription	Fetal Brain Female	brain
9	chr6:150552600-150555000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:150552600-150557400	Weak transcription	Fetal Lung	lung
11	chr6:150552600-150559400	Weak transcription	Lung	lung
12	chr6:150552800-150555400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:150553000-150556400	Weak transcription	Fetal Heart	heart
14	chr6:150553000-150557400	Weak transcription	Fetal Brain Male	brain
15	chr6:150554000-150556000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:150554400-150555000	Enhancers	NHEK	skin
17	chr6:150554400-150557200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:150554400-150559000	Weak transcription	Osteobl	bone
19	chr6:150554400-150559200	Weak transcription	K562	blood
20	chr6:150554800-150555000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:150554800-150555000	Enhancers	Right Ventricle	heart
22	chr6:150554800-150555400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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