Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150542106..150544405-chr6:150549647..150551463,2	MCF-7	breast:
2	chr6:150543237..150546880-chr6:150548388..150552037,4	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11155716	0.94[EUR][1000 genomes]
rs12173725	0.80[ASN][1000 genomes]
rs12662622	0.91[ASN][1000 genomes]
rs4870378	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4870392	0.94[EUR][1000 genomes]
rs6557375	0.92[ASN][1000 genomes]
rs6557376	0.92[ASN][1000 genomes]
rs6936990	0.86[ASN][1000 genomes]
rs7741317	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs926930	0.81[ASN][1000 genomes]
rs9322253	0.95[ASN][1000 genomes]
rs9371830	0.98[ASN][1000 genomes]
rs9371831	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371833	0.98[ASN][1000 genomes]
rs9371834	0.98[ASN][1000 genomes]
rs9371843	0.93[ASN][1000 genomes]
rs9371844	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9383732	0.93[ASN][1000 genomes]
rs9383740	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9383747	0.91[EUR][1000 genomes]
rs9384259	0.89[ASN][1000 genomes]
rs9384261	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9384262	0.93[ASN][1000 genomes]
rs9384264	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9397206	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9397764	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9478585	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150534000-150551000	Weak transcription	Right Atrium	heart
2	chr6:150534600-150548600	Weak transcription	Left Ventricle	heart
3	chr6:150537200-150550800	Weak transcription	HMEC	breast
4	chr6:150537200-150550800	Weak transcription	NHEK	skin
5	chr6:150540200-150550600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:150540200-150550800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:150542200-150545800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:150542600-150548000	Weak transcription	Fetal Brain Female	brain
9	chr6:150542600-150550600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:150542800-150545800	Weak transcription	Fetal Heart	heart
11	chr6:150542800-150548000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:150542800-150550800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:150543000-150550800	Weak transcription	K562	blood
14	chr6:150543200-150548000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:150543400-150544800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:150544200-150544800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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