Variant report

Variant	rs12662622
Chromosome Location	chr6:150557640-150557641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150553894..150555591-chr6:150556253..150558267,2	K562	blood:
2	chr6:150555928..150559365-chr6:150559823..150562005,4	K562	blood:
3	chr6:150549533..150552708-chr6:150557386..150559321,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs2880661	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3734729	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs4870404	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6557375	0.84[ASN][1000 genomes]
rs6557376	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs6922326	0.91[ASN][1000 genomes]
rs6936990	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7741317	0.83[JPT][hapmap]
rs7749005	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9322253	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322254	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9371362	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs9371830	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs9371831	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs9371833	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9371834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9371843	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9371844	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9371852	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs9383732	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9384259	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs9384261	1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs9384262	1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9384264	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9384270	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9397206	0.83[JPT][hapmap]
rs9397229	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9397234	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9397777	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9397780	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9885696	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150550000-150558600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:150551200-150558800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150552400-150558600	Weak transcription	Fetal Brain Female	brain
4	chr6:150552600-150559400	Weak transcription	Lung	lung
5	chr6:150554400-150559000	Weak transcription	Osteobl	bone
6	chr6:150554400-150559200	Weak transcription	K562	blood
7	chr6:150555200-150561400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:150555400-150558600	Weak transcription	HMEC	breast
9	chr6:150555400-150559800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:150555800-150558600	Weak transcription	NHEK	skin
11	chr6:150556400-150558000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:150556400-150558600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:150556400-150559800	Enhancers	Left Ventricle	heart
14	chr6:150556400-150560000	Enhancers	Fetal Heart	heart
15	chr6:150556600-150560400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:150556800-150557800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:150557000-150557800	Enhancers	Adipose Nuclei	Adipose
18	chr6:150557000-150560000	Enhancers	Right Ventricle	heart
19	chr6:150557000-150560400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:150557200-150558200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:150557400-150557800	Enhancers	Psoas Muscle	Psoas
22	chr6:150557400-150558000	Weak transcription	Fetal Muscle Leg	muscle
23	chr6:150557400-150558400	Enhancers	Fetal Brain Male	brain
24	chr6:150557400-150559800	Enhancers	Fetal Lung	lung
25	chr6:150557600-150558000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr6:150557600-150558200	Enhancers	Pancreas	Pancrea
27	chr6:150557600-150560000	Enhancers	Right Atrium	heart
28	chr6:150557600-150568800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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