Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11962230	0.95[AFR][1000 genomes]
rs11966866	0.94[AFR][1000 genomes]
rs12173725	0.91[ASN][1000 genomes]
rs12662622	0.83[JPT][hapmap]
rs4870378	0.93[ASN][1000 genomes]
rs6557375	0.83[ASN][1000 genomes]
rs6557376	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs6926969	0.94[AFR][1000 genomes]
rs6935244	0.94[AFR][1000 genomes]
rs6936990	0.83[JPT][hapmap]
rs7741317	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7749005	0.83[JPT][hapmap]
rs7753001	0.99[ASN][1000 genomes]
rs7758014	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7758186	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs926930	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs9322253	0.92[JPT][hapmap]
rs9371830	0.90[JPT][hapmap]
rs9371831	0.92[JPT][hapmap]
rs9371833	0.92[JPT][hapmap]
rs9371834	0.92[JPT][hapmap]
rs9371843	0.92[JPT][hapmap]
rs9371844	0.83[JPT][hapmap]
rs9383732	0.92[JPT][hapmap]
rs9384259	0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs9384261	0.92[JPT][hapmap]
rs9384262	0.83[JPT][hapmap]
rs9384264	0.83[JPT][hapmap]
rs9397206	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9478585	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs9885695	0.89[YRI][hapmap];0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150526600-150541800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:150530200-150541600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150531000-150541800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:150533400-150541400	Weak transcription	Fetal Brain Female	brain
5	chr6:150534000-150551000	Weak transcription	Right Atrium	heart
6	chr6:150534600-150548600	Weak transcription	Left Ventricle	heart
7	chr6:150534800-150541800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:150535600-150541400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:150536000-150540200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:150536000-150540800	Weak transcription	Fetal Heart	heart
11	chr6:150537000-150538800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:150537200-150550800	Weak transcription	HMEC	breast
13	chr6:150537200-150550800	Weak transcription	NHEK	skin
14	chr6:150537800-150539800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:150538000-150538800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search: