Variant report

Variant	rs7758014
Chromosome Location	chr6:150536595-150536596
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11962230	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963544	1.00[ASN][1000 genomes]
rs11966866	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079418	0.85[GIH][hapmap];0.83[ASN][1000 genomes]
rs17079444	1.00[ASN][1000 genomes]
rs17079447	1.00[ASN][1000 genomes]
rs17079450	1.00[ASN][1000 genomes]
rs17079463	1.00[ASN][1000 genomes]
rs17079471	1.00[ASN][1000 genomes]
rs56000249	1.00[ASN][1000 genomes]
rs56244054	1.00[ASN][1000 genomes]
rs57214329	0.83[ASN][1000 genomes]
rs59288040	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60476674	0.83[ASN][1000 genomes]
rs6557374	1.00[ASN][1000 genomes]
rs6910142	1.00[ASN][1000 genomes]
rs6922765	1.00[ASN][1000 genomes]
rs6926969	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935244	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72995381	1.00[ASN][1000 genomes]
rs73007978	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009855	1.00[ASN][1000 genomes]
rs73009883	1.00[ASN][1000 genomes]
rs73009887	1.00[ASN][1000 genomes]
rs73009893	1.00[ASN][1000 genomes]
rs73009895	1.00[ASN][1000 genomes]
rs73011604	1.00[ASN][1000 genomes]
rs73011614	1.00[ASN][1000 genomes]
rs73011616	1.00[ASN][1000 genomes]
rs73011621	1.00[ASN][1000 genomes]
rs73011630	1.00[ASN][1000 genomes]
rs73011655	1.00[ASN][1000 genomes]
rs73011658	1.00[ASN][1000 genomes]
rs7744115	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747964	1.00[ASN][1000 genomes]
rs7755328	0.87[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758186	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763851	1.00[ASN][1000 genomes]
rs9479943	0.83[ASN][1000 genomes]
rs9479970	1.00[ASN][1000 genomes]
rs9479978	1.00[ASN][1000 genomes]
rs9480034	1.00[ASN][1000 genomes]
rs9885695	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885696	1.00[YRI][hapmap];0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150526600-150541800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:150530200-150541600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150531000-150541800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:150533400-150541400	Weak transcription	Fetal Brain Female	brain
5	chr6:150534000-150551000	Weak transcription	Right Atrium	heart
6	chr6:150534400-150538000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:150534600-150548600	Weak transcription	Left Ventricle	heart
8	chr6:150534800-150541800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:150535600-150541400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:150535800-150537000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:150535800-150537800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:150536000-150537200	Strong transcription	NHEK	skin
13	chr6:150536000-150540200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:150536000-150540800	Weak transcription	Fetal Heart	heart
15	chr6:150536200-150537200	Strong transcription	HMEC	breast

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