Variant report

Variant	rs73009893
Chromosome Location	chr6:150548418-150548419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150543237..150546880-chr6:150548388..150552037,4	K562	blood:
2	chr6:150548351..150551820-chr6:150552592..150556737,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11962230	1.00[ASN][1000 genomes]
rs11963544	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966866	1.00[ASN][1000 genomes]
rs17079418	0.83[ASN][1000 genomes]
rs17079444	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079447	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079450	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079471	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28675173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56000249	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56244054	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57214329	0.83[ASN][1000 genomes]
rs59288040	1.00[ASN][1000 genomes]
rs60476674	0.83[ASN][1000 genomes]
rs6557374	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910142	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926969	1.00[ASN][1000 genomes]
rs6935244	1.00[ASN][1000 genomes]
rs72995381	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73007978	1.00[ASN][1000 genomes]
rs73009855	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011630	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011655	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011658	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744115	1.00[ASN][1000 genomes]
rs7747964	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755328	1.00[ASN][1000 genomes]
rs7758014	1.00[ASN][1000 genomes]
rs7758186	1.00[ASN][1000 genomes]
rs7763851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479943	0.83[ASN][1000 genomes]
rs9479970	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479978	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480034	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885695	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150534000-150551000	Weak transcription	Right Atrium	heart
2	chr6:150534600-150548600	Weak transcription	Left Ventricle	heart
3	chr6:150537200-150550800	Weak transcription	HMEC	breast
4	chr6:150537200-150550800	Weak transcription	NHEK	skin
5	chr6:150540200-150550600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:150540200-150550800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:150542600-150550600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:150542800-150550800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:150543000-150550800	Weak transcription	K562	blood
10	chr6:150546000-150548800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:150546000-150549000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr6:150546600-150553000	Enhancers	Fetal Brain Male	brain
13	chr6:150546800-150549000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
14	chr6:150547000-150549200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:150547200-150548800	Enhancers	Right Ventricle	heart
16	chr6:150547400-150548800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
17	chr6:150547400-150549000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
18	chr6:150547600-150549600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:150548000-150548600	Enhancers	Fetal Heart	heart
20	chr6:150548000-150548800	Enhancers	Fetal Brain Female	brain
21	chr6:150548000-150549200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
22	chr6:150548000-150549800	Enhancers	Psoas Muscle	Psoas
23	chr6:150548000-150550000	Enhancers	Fetal Kidney	kidney
24	chr6:150548000-150550000	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr6:150548000-150550000	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr6:150548200-150548800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
27	chr6:150548200-150549000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:150548200-150551400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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