Variant report

Variant	rs9479970
Chromosome Location	chr6:150542936-150542937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150542106..150544405-chr6:150549647..150551463,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11962230	1.00[ASN][1000 genomes]
rs11963544	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966866	1.00[ASN][1000 genomes]
rs17079418	0.83[ASN][1000 genomes]
rs17079444	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079463	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079471	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28675173	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56000249	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56244054	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57214329	0.83[ASN][1000 genomes]
rs59288040	1.00[ASN][1000 genomes]
rs60476674	0.83[ASN][1000 genomes]
rs6557374	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6557375	0.88[AFR][1000 genomes]
rs6557376	0.80[AFR][1000 genomes]
rs6910142	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922765	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926969	1.00[ASN][1000 genomes]
rs6935244	1.00[ASN][1000 genomes]
rs72995381	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73007978	1.00[ASN][1000 genomes]
rs73009855	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009883	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009887	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009893	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009895	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011604	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011614	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011616	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011621	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011630	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011655	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011658	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744115	1.00[ASN][1000 genomes]
rs7747964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753001	0.86[AFR][1000 genomes]
rs7755328	1.00[ASN][1000 genomes]
rs7758014	1.00[ASN][1000 genomes]
rs7758186	1.00[ASN][1000 genomes]
rs7763851	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384251	0.87[AFR][1000 genomes]
rs9479943	0.83[ASN][1000 genomes]
rs9479978	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480034	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885695	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150534000-150551000	Weak transcription	Right Atrium	heart
2	chr6:150534600-150548600	Weak transcription	Left Ventricle	heart
3	chr6:150537200-150550800	Weak transcription	HMEC	breast
4	chr6:150537200-150550800	Weak transcription	NHEK	skin
5	chr6:150540200-150550600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:150540200-150550800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:150541800-150543200	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr6:150542200-150545800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:150542400-150543000	Enhancers	K562	blood
10	chr6:150542400-150543400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:150542600-150544200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:150542600-150548000	Weak transcription	Fetal Brain Female	brain
13	chr6:150542600-150550600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:150542800-150544200	Weak transcription	Fetal Brain Male	brain
15	chr6:150542800-150545800	Weak transcription	Fetal Heart	heart
16	chr6:150542800-150548000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:150542800-150550800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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