Variant report

Variant	rs28675173
Chromosome Location	chr6:150551816-150551817
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150525124..150527770-chr6:150549822..150552808,2	K562	blood:
2	chr6:150549533..150552708-chr6:150557386..150559321,3	K562	blood:
3	chr6:150543237..150546880-chr6:150548388..150552037,4	K562	blood:
4	chr6:150548351..150551820-chr6:150552592..150556737,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11963544	1.00[EUR][1000 genomes]
rs17079444	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17079447	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17079450	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17079463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17079471	1.00[EUR][1000 genomes]
rs56000249	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56244054	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6557374	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6910142	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6922765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72995381	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73009855	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73009883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73009887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73009893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73009895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73011604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73011614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73011616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73011621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73011630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73011655	0.94[EUR][1000 genomes]
rs73011658	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7747964	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7763851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9479970	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9479978	0.94[EUR][1000 genomes]
rs9480034	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150546600-150553000	Enhancers	Fetal Brain Male	brain
2	chr6:150548800-150553000	Enhancers	Fetal Heart	heart
3	chr6:150549800-150554000	Weak transcription	Psoas Muscle	Psoas
4	chr6:150549800-150556400	Weak transcription	Left Ventricle	heart
5	chr6:150550000-150556600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:150550000-150558600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:150550600-150552200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:150550600-150552400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:150550600-150553000	Enhancers	NH-A	brain
10	chr6:150550600-150553200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:150550800-150552200	Enhancers	NHEK	skin
12	chr6:150550800-150552600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:150550800-150552600	Enhancers	K562	blood
14	chr6:150550800-150552800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:150550800-150553800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:150550800-150554800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:150550800-150555400	Enhancers	HMEC	breast
18	chr6:150551000-150552200	Enhancers	HSMMtube	muscle
19	chr6:150551000-150552400	Enhancers	Right Atrium	heart
20	chr6:150551000-150552600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:150551000-150552600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:150551000-150552600	Enhancers	Placenta Amnion	Placenta Amnion
23	chr6:150551000-150552600	Enhancers	NHDF-Ad	bronchial
24	chr6:150551000-150552800	Enhancers	HSMM	muscle
25	chr6:150551000-150555000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:150551200-150552400	Enhancers	Right Ventricle	heart
27	chr6:150551200-150552400	Weak transcription	NHLF	lung
28	chr6:150551200-150552600	Enhancers	Fetal Muscle Leg	muscle
29	chr6:150551200-150553400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:150551200-150558800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:150551400-150552200	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr6:150551400-150553600	Enhancers	Osteobl	bone
33	chr6:150551600-150552200	Weak transcription	Fetal Brain Female	brain
34	chr6:150551600-150554000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:150551800-150552800	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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