Variant report

Variant	rs73011630
Chromosome Location	chr6:150559843-150559844
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150557817..150561475-chr6:150561596..150566291,6	K562	blood:
2	chr6:150555928..150559365-chr6:150559823..150562005,4	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11962230	1.00[ASN][1000 genomes]
rs11963544	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966866	1.00[ASN][1000 genomes]
rs17079418	0.83[ASN][1000 genomes]
rs17079444	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079447	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079450	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079471	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28675173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56000249	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56244054	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57214329	0.83[ASN][1000 genomes]
rs59288040	1.00[ASN][1000 genomes]
rs60476674	0.83[ASN][1000 genomes]
rs6557374	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910142	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926969	1.00[ASN][1000 genomes]
rs6935244	1.00[ASN][1000 genomes]
rs72995381	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73007978	1.00[ASN][1000 genomes]
rs73009855	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009893	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011655	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011658	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744115	1.00[ASN][1000 genomes]
rs7747964	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755328	1.00[ASN][1000 genomes]
rs7758014	1.00[ASN][1000 genomes]
rs7758186	1.00[ASN][1000 genomes]
rs7763851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479943	0.83[ASN][1000 genomes]
rs9479970	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479978	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480034	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885695	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150555200-150561400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:150556400-150560000	Enhancers	Fetal Heart	heart
3	chr6:150556600-150560400	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr6:150557000-150560000	Enhancers	Right Ventricle	heart
5	chr6:150557000-150560400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:150557600-150560000	Enhancers	Right Atrium	heart
7	chr6:150557600-150568800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:150558600-150560000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:150558600-150560200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr6:150558600-150560200	Enhancers	HMEC	breast
11	chr6:150558800-150560400	Enhancers	Fetal Brain Male	brain
12	chr6:150559000-150560000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:150559000-150560000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:150559000-150560000	Enhancers	Fetal Muscle Leg	muscle
15	chr6:150559000-150560000	Enhancers	Psoas Muscle	Psoas
16	chr6:150559000-150560400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:150559200-150560000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:150559200-150560000	Enhancers	HUVEC	blood vessel
19	chr6:150559400-150560200	Enhancers	Duodenum Mucosa	Duodenum
20	chr6:150559400-150560600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
21	chr6:150559600-150560400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
22	chr6:150559800-150560000	Enhancers	K562	blood
23	chr6:150559800-150565000	Weak transcription	NHEK	skin
24	chr6:150559800-150565000	Weak transcription	Osteobl	bone
25	chr6:150559800-150565400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:150559800-150568800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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