Variant report

Variant	rs73011655
Chromosome Location	chr6:150574334-150574335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150571832..150575013-chr6:150575106..150579101,3	K562	blood:
2	chr6:150571087..150575708-chr6:150576058..150580847,8	MCF-7	breast:
3	chr6:150572423..150575831-chr6:150576136..150578517,3	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11962230	1.00[ASN][1000 genomes]
rs11963544	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966866	1.00[ASN][1000 genomes]
rs17079418	0.83[ASN][1000 genomes]
rs17079444	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079447	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079450	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079463	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079471	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28675173	0.94[EUR][1000 genomes]
rs56000249	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56244054	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57214329	0.83[ASN][1000 genomes]
rs59288040	1.00[ASN][1000 genomes]
rs60476674	0.83[ASN][1000 genomes]
rs6557374	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910142	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922765	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926969	1.00[ASN][1000 genomes]
rs6935244	1.00[ASN][1000 genomes]
rs72995381	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73007978	1.00[ASN][1000 genomes]
rs73009855	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009883	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009887	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009893	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009895	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011604	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011614	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011616	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011621	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011630	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011658	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744115	1.00[ASN][1000 genomes]
rs7747964	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755328	1.00[ASN][1000 genomes]
rs7758014	1.00[ASN][1000 genomes]
rs7758186	1.00[ASN][1000 genomes]
rs7763851	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479943	0.83[ASN][1000 genomes]
rs9479970	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479978	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480034	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885695	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150569600-150576800	Weak transcription	Esophagus	oesophagus
2	chr6:150569800-150576400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:150569800-150577000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:150570400-150575000	Enhancers	Fetal Muscle Leg	muscle
5	chr6:150570400-150576000	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr6:150570400-150577600	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr6:150571000-150576800	Enhancers	HMEC	breast
8	chr6:150571000-150579200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:150571400-150579400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:150571600-150576800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:150571600-150577200	Enhancers	Fetal Heart	heart
12	chr6:150571800-150575000	Enhancers	Right Atrium	heart
13	chr6:150572000-150575600	Enhancers	Psoas Muscle	Psoas
14	chr6:150572000-150576600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:150572200-150574800	Enhancers	Fetal Intestine Small	intestine
16	chr6:150572400-150575000	Enhancers	Duodenum Mucosa	Duodenum
17	chr6:150572400-150576800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:150572600-150576000	Weak transcription	Placenta	Placenta
19	chr6:150572600-150577000	Weak transcription	Lung	lung
20	chr6:150572800-150576200	Enhancers	NHEK	skin
21	chr6:150573600-150574400	Bivalent Enhancer	HSMMtube	muscle
22	chr6:150573600-150577000	Weak transcription	Gastric	stomach
23	chr6:150573800-150574400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:150574000-150574400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:150574000-150574600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:150574000-150574600	Flanking Active TSS	K562	blood
27	chr6:150574000-150575200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr6:150574000-150576000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:150574000-150576400	Weak transcription	Right Ventricle	heart
30	chr6:150574000-150576600	Enhancers	Osteobl	bone
31	chr6:150574200-150574400	Weak transcription	Left Ventricle	heart
32	chr6:150574200-150574600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:150574200-150574800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:150574200-150574800	Enhancers	NH-A	brain
35	chr6:150574200-150575800	Enhancers	Placenta Amnion	Placenta Amnion
36	chr6:150574200-150577000	Weak transcription	Hela-S3	cervix
37	chr6:150574200-150578800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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