Variant report

Variant	rs73011658
Chromosome Location	chr6:150578928-150578929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150576059..150579717-chr6:150580532..150582490,4	K562	blood:
2	chr6:150571832..150575013-chr6:150575106..150579101,3	K562	blood:
3	chr6:150571087..150575708-chr6:150576058..150580847,8	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11962230	1.00[ASN][1000 genomes]
rs11963544	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966866	1.00[ASN][1000 genomes]
rs17079418	0.83[ASN][1000 genomes]
rs17079444	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079447	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079450	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079463	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079471	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28675173	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56000249	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56244054	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57214329	0.83[ASN][1000 genomes]
rs59288040	1.00[ASN][1000 genomes]
rs60476674	0.83[ASN][1000 genomes]
rs6557374	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922765	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926969	1.00[ASN][1000 genomes]
rs6935244	1.00[ASN][1000 genomes]
rs72995381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73007978	1.00[ASN][1000 genomes]
rs73009855	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009883	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009887	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009893	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009895	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011604	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011614	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011616	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011621	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011630	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011655	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744115	1.00[ASN][1000 genomes]
rs7747964	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755328	1.00[ASN][1000 genomes]
rs7758014	1.00[ASN][1000 genomes]
rs7758186	1.00[ASN][1000 genomes]
rs7763851	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479943	0.83[ASN][1000 genomes]
rs9479970	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479978	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480034	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885695	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150571000-150579200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:150571400-150579400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:150574800-150590800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:150575600-150579000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:150576400-150579600	Weak transcription	K562	blood
6	chr6:150576400-150580400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:150576800-150579000	Enhancers	Placenta Amnion	Placenta Amnion
8	chr6:150577000-150579000	Enhancers	Hela-S3	cervix
9	chr6:150577200-150579000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:150577400-150579200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:150577400-150585200	Weak transcription	Right Ventricle	heart
12	chr6:150577400-150585400	Weak transcription	Left Ventricle	heart
13	chr6:150577400-150588200	Weak transcription	Psoas Muscle	Psoas
14	chr6:150577600-150579200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:150577600-150579400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:150577600-150580400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:150577800-150580000	Enhancers	HMEC	breast
18	chr6:150578000-150589000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:150578200-150579200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:150578200-150579400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:150578200-150580600	Weak transcription	Fetal Heart	heart
22	chr6:150578400-150579400	Enhancers	NHEK	skin
23	chr6:150578400-150588000	Weak transcription	NH-A	brain

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