Variant report

Variant	rs6910142
Chromosome Location	chr6:150572330-150572331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150571832..150575013-chr6:150575106..150579101,3	K562	blood:
2	chr6:150571087..150575708-chr6:150576058..150580847,8	MCF-7	breast:
3	chr6:150564776..150567057-chr6:150571818..150574314,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11962230	1.00[ASN][1000 genomes]
rs11963544	1.00[CEU][hapmap];0.90[GIH][hapmap];0.87[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966866	1.00[ASN][1000 genomes]
rs17079418	0.83[ASN][1000 genomes]
rs17079444	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079447	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079450	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079463	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079471	1.00[CEU][hapmap];0.90[GIH][hapmap];0.87[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28675173	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56000249	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56244054	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57214329	0.83[ASN][1000 genomes]
rs59288040	1.00[ASN][1000 genomes]
rs60476674	0.83[ASN][1000 genomes]
rs6557374	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922765	1.00[CEU][hapmap];0.90[GIH][hapmap];0.87[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926969	1.00[ASN][1000 genomes]
rs6935244	1.00[ASN][1000 genomes]
rs72995381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73007978	1.00[ASN][1000 genomes]
rs73009855	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009883	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009887	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009893	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009895	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011604	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011614	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011616	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011621	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011630	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011655	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744115	1.00[ASN][1000 genomes]
rs7747964	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755328	1.00[ASN][1000 genomes]
rs7758014	1.00[ASN][1000 genomes]
rs7758186	1.00[ASN][1000 genomes]
rs7763851	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479943	0.83[ASN][1000 genomes]
rs9479970	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479978	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480034	1.00[CEU][hapmap];0.90[GIH][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885695	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150569600-150572400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:150569600-150574000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150569600-150576800	Weak transcription	Esophagus	oesophagus
4	chr6:150569800-150573400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:150569800-150576400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:150569800-150577000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:150570200-150573600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:150570400-150575000	Enhancers	Fetal Muscle Leg	muscle
9	chr6:150570400-150576000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr6:150570400-150577600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr6:150570600-150573400	Enhancers	HSMMtube	muscle
12	chr6:150571000-150572600	Enhancers	Fetal Muscle Trunk	muscle
13	chr6:150571000-150574200	Enhancers	Left Ventricle	heart
14	chr6:150571000-150576800	Enhancers	HMEC	breast
15	chr6:150571000-150579200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:150571400-150572400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:150571400-150572800	Genic enhancers	NHEK	skin
18	chr6:150571400-150574000	Enhancers	K562	blood
19	chr6:150571400-150579400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:150571600-150572400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:150571600-150572600	Enhancers	Placenta	Placenta
22	chr6:150571600-150573000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:150571600-150573000	Enhancers	HSMM	muscle
24	chr6:150571600-150576800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:150571600-150577200	Enhancers	Fetal Heart	heart
26	chr6:150571800-150572400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:150571800-150572600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:150571800-150572600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:150571800-150572600	Enhancers	Hela-S3	cervix
30	chr6:150571800-150572600	Enhancers	NH-A	brain
31	chr6:150571800-150572600	Enhancers	Osteobl	bone
32	chr6:150571800-150572800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:150571800-150572800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:150571800-150572800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr6:150571800-150575000	Enhancers	Right Atrium	heart
36	chr6:150572000-150572600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:150572000-150572600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:150572000-150572600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:150572000-150572600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:150572000-150572600	Enhancers	Fetal Brain Male	brain
41	chr6:150572000-150572600	Enhancers	Fetal Stomach	stomach
42	chr6:150572000-150572600	Enhancers	Lung	lung
43	chr6:150572000-150573600	Enhancers	Fetal Lung	lung
44	chr6:150572000-150574200	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr6:150572000-150575600	Enhancers	Psoas Muscle	Psoas
46	chr6:150572000-150576600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:150572200-150573000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr6:150572200-150574000	Enhancers	Right Ventricle	heart
49	chr6:150572200-150574800	Enhancers	Fetal Intestine Small	intestine

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