Variant report

Variant	rs11963544
Chromosome Location	chr6:150549998-150549999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150549697..150551669-chr6:150591233..150592989,2	K562	blood:
2	chr6:150525124..150527770-chr6:150549822..150552808,2	K562	blood:
3	chr6:150549533..150552708-chr6:150557386..150559321,3	K562	blood:
4	chr6:150543237..150546880-chr6:150548388..150552037,4	K562	blood:
5	chr6:150548351..150551820-chr6:150552592..150556737,3	K562	blood:
6	chr6:150542106..150544405-chr6:150549647..150551463,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11962230	1.00[ASN][1000 genomes]
rs11966866	1.00[ASN][1000 genomes]
rs17079418	0.83[ASN][1000 genomes]
rs17079444	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079447	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079450	1.00[CEU][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079463	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079471	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28675173	1.00[EUR][1000 genomes]
rs56000249	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56244054	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57214329	0.83[ASN][1000 genomes]
rs59288040	1.00[ASN][1000 genomes]
rs60476674	0.83[ASN][1000 genomes]
rs6557374	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910142	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922765	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926969	1.00[ASN][1000 genomes]
rs6935244	1.00[ASN][1000 genomes]
rs72995381	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73007978	1.00[ASN][1000 genomes]
rs73009855	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009883	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009887	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009893	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009895	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011604	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011614	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011616	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011621	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011630	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011655	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011658	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744115	1.00[ASN][1000 genomes]
rs7747964	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749005	0.84[LWK][hapmap];0.83[YRI][hapmap]
rs7755328	1.00[ASN][1000 genomes]
rs7758014	1.00[ASN][1000 genomes]
rs7758186	1.00[ASN][1000 genomes]
rs7763851	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384259	0.81[YRI][hapmap]
rs9479943	0.83[ASN][1000 genomes]
rs9479970	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479978	1.00[CEU][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480034	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885695	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150534000-150551000	Weak transcription	Right Atrium	heart
2	chr6:150537200-150550800	Weak transcription	HMEC	breast
3	chr6:150537200-150550800	Weak transcription	NHEK	skin
4	chr6:150540200-150550600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:150540200-150550800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:150542600-150550600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:150542800-150550800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:150543000-150550800	Weak transcription	K562	blood
9	chr6:150546600-150553000	Enhancers	Fetal Brain Male	brain
10	chr6:150548000-150550000	Enhancers	Fetal Kidney	kidney
11	chr6:150548000-150550000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr6:150548000-150550000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr6:150548200-150551400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:150548800-150550000	Enhancers	Fetal Lung	lung
15	chr6:150548800-150550800	Weak transcription	Fetal Brain Female	brain
16	chr6:150548800-150551200	Weak transcription	Right Ventricle	heart
17	chr6:150548800-150553000	Enhancers	Fetal Heart	heart
18	chr6:150549000-150550000	Enhancers	Fetal Muscle Leg	muscle
19	chr6:150549400-150550000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:150549400-150550400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:150549400-150550800	Enhancers	Osteobl	bone
22	chr6:150549600-150551000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:150549800-150551000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:150549800-150554000	Weak transcription	Psoas Muscle	Psoas
25	chr6:150549800-150556400	Weak transcription	Left Ventricle	heart

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