Variant report

Variant	rs9397206
Chromosome Location	chr6:150541658-150541659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150515558..150517711-chr6:150540869..150542397,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11155716	0.91[EUR][1000 genomes]
rs12173725	0.97[ASN][1000 genomes]
rs12662622	0.83[JPT][hapmap]
rs3734729	0.85[CEU][hapmap]
rs4870378	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4870392	0.91[EUR][1000 genomes]
rs6557376	0.92[JPT][hapmap]
rs6922326	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6936990	0.83[JPT][hapmap]
rs7741317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749005	0.85[CHD][hapmap];0.83[JPT][hapmap]
rs7753001	0.93[ASN][1000 genomes]
rs926930	0.92[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322253	0.92[JPT][hapmap]
rs9371362	0.85[CEU][hapmap]
rs9371830	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs9371831	1.00[CEU][hapmap];0.92[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9371833	0.90[CHD][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs9371834	0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs9371843	0.92[JPT][hapmap]
rs9371844	0.83[JPT][hapmap];0.93[EUR][1000 genomes]
rs9371852	0.85[CEU][hapmap]
rs9383732	0.92[JPT][hapmap]
rs9383740	0.91[EUR][1000 genomes]
rs9383747	0.87[EUR][1000 genomes]
rs9384259	0.92[JPT][hapmap]
rs9384261	0.85[CHD][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];0.89[TSI][hapmap]
rs9384262	0.85[CHD][hapmap];0.83[JPT][hapmap]
rs9384264	1.00[CEU][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes]
rs9397764	0.93[EUR][1000 genomes]
rs9478585	0.92[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs9885696	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150526600-150541800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:150531000-150541800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:150534000-150551000	Weak transcription	Right Atrium	heart
4	chr6:150534600-150548600	Weak transcription	Left Ventricle	heart
5	chr6:150534800-150541800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:150537200-150550800	Weak transcription	HMEC	breast
7	chr6:150537200-150550800	Weak transcription	NHEK	skin
8	chr6:150540200-150541800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:150540200-150542200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:150540200-150550600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:150540200-150550800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:150540800-150542800	Enhancers	Fetal Heart	heart
13	chr6:150541000-150542000	Enhancers	Psoas Muscle	Psoas
14	chr6:150541000-150542600	Enhancers	Fetal Brain Male	brain
15	chr6:150541400-150542000	Enhancers	K562	blood
16	chr6:150541400-150542400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:150541400-150542600	Enhancers	Fetal Brain Female	brain
18	chr6:150541600-150542600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr6:150541600-150542800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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