Variant report

Variant	rs3735370
Chromosome Location	chr7:104942332-104942333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MLL5-6	chr7:104941969-104942533	NONHSAT122616

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs2073550	0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs2240462	0.87[ASN][1000 genomes]
rs2240464	0.84[ASN][1000 genomes]
rs2299296	0.81[ASN][1000 genomes]
rs2299300	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2299301	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2299302	0.84[ASN][1000 genomes]
rs2299307	0.87[ASN][1000 genomes]
rs2299310	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2299317	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2299318	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2299329	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs28722876	0.93[ASN][1000 genomes]
rs34217930	1.00[AFR][1000 genomes]
rs3735371	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3779206	1.00[ASN][1000 genomes]
rs3779211	0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3801280	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3801286	0.81[ASN][1000 genomes]
rs3801287	0.87[ASN][1000 genomes]
rs56318802	0.81[ASN][1000 genomes]
rs56654846	0.87[ASN][1000 genomes]
rs56666353	0.87[ASN][1000 genomes]
rs56676421	0.87[ASN][1000 genomes]
rs56851478	0.81[ASN][1000 genomes]
rs57212372	1.00[ASN][1000 genomes]
rs57323610	0.87[ASN][1000 genomes]
rs57369490	0.84[ASN][1000 genomes]
rs57492989	0.87[ASN][1000 genomes]
rs58011998	1.00[ASN][1000 genomes]
rs58319797	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58469240	0.81[ASN][1000 genomes]
rs58550581	1.00[ASN][1000 genomes]
rs58822458	1.00[ASN][1000 genomes]
rs58852948	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59042853	1.00[ASN][1000 genomes]
rs59290277	0.81[ASN][1000 genomes]
rs59315868	1.00[ASN][1000 genomes]
rs59581221	0.93[ASN][1000 genomes]
rs59602427	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60101098	1.00[ASN][1000 genomes]
rs60327543	1.00[ASN][1000 genomes]
rs60676837	1.00[ASN][1000 genomes]
rs60714423	0.84[ASN][1000 genomes]
rs60785296	0.88[ASN][1000 genomes]
rs60947765	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60950478	0.81[ASN][1000 genomes]
rs60968925	1.00[ASN][1000 genomes]
rs61262987	0.87[ASN][1000 genomes]
rs61677699	0.87[ASN][1000 genomes]
rs61705676	0.87[ASN][1000 genomes]
rs73404094	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv8196	chr7:104763559-105155978	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv34580	chr7:104763580-105153242	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv2758127	chr7:104766707-105110581	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv932138	chr7:104826194-105152816	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv1015688	chr7:104849770-105182998	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv888928	chr7:104897964-104944847	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1029832	chr7:104905057-105112489	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	esv2753646	chr7:104905588-104972800	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	esv1803707	chr7:104928335-104948317	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv1023767	chr7:104931143-105190662	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
15	nsv539049	chr7:104931143-105190662	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104910800-104946000	Weak transcription	Primary B cells from cord blood	blood
2	chr7:104917200-104944600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:104920600-104959600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:104923200-104944200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:104925000-104944200	Weak transcription	A549	lung
6	chr7:104926400-104944600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:104929400-104944600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:104929800-104944000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:104934800-104944200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:104935000-104944200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:104935200-104942400	Weak transcription	Brain Angular Gyrus	brain
12	chr7:104936000-104942400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr7:104937800-104944000	Weak transcription	HepG2	liver
14	chr7:104938400-104942400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr7:104938800-104942600	Enhancers	Fetal Thymus	thymus
16	chr7:104939200-104954400	Weak transcription	Stomach Mucosa	stomach
17	chr7:104939400-104944400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr7:104939400-104950200	Weak transcription	Psoas Muscle	Psoas
19	chr7:104939400-104950200	Weak transcription	Right Atrium	heart
20	chr7:104939600-104944200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:104939600-104944400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr7:104939600-104944600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr7:104939600-104944600	Weak transcription	Ovary	ovary
24	chr7:104939600-104945200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:104939600-104945200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr7:104939600-104945600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:104939600-104947400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr7:104939600-104950200	Weak transcription	Gastric	stomach
29	chr7:104939600-104950200	Weak transcription	Pancreas	Pancrea
30	chr7:104939600-104966200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr7:104939800-104944200	Weak transcription	Brain Hippocampus Middle	brain
32	chr7:104939800-104944400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr7:104939800-104944400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr7:104939800-104944600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr7:104939800-104944600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr7:104939800-104944800	Weak transcription	Primary B cells from peripheral blood	blood
37	chr7:104939800-104946400	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr7:104939800-104950200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr7:104939800-104950200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr7:104940000-104942600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr7:104940000-104944600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr7:104940200-104944400	Weak transcription	Thymus	Thymus
43	chr7:104940400-104944400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr7:104940800-104944400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr7:104940800-104949200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr7:104941000-104944200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr7:104941000-104944600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr7:104941200-104944400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr7:104941200-104944400	Enhancers	Dnd41	blood
50	chr7:104941200-104944600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links