Variant report

Variant	rs3779211
Chromosome Location	chr7:104810135-104810136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs2073550	1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2240456	0.93[ASN][1000 genomes]
rs2240462	1.00[ASN][1000 genomes]
rs2240464	0.97[ASN][1000 genomes]
rs2299296	0.93[ASN][1000 genomes]
rs2299300	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2299301	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2299302	0.97[ASN][1000 genomes]
rs2299307	1.00[ASN][1000 genomes]
rs2299310	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2299317	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2299318	0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2299329	0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs28722876	0.93[ASN][1000 genomes]
rs3735370	0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3735371	0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3735378	1.00[CHB][hapmap]
rs3779206	0.87[ASN][1000 genomes]
rs3801280	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3801286	0.94[ASN][1000 genomes]
rs3801287	1.00[ASN][1000 genomes]
rs56318802	0.94[ASN][1000 genomes]
rs56654846	1.00[ASN][1000 genomes]
rs56666353	1.00[ASN][1000 genomes]
rs56676421	1.00[ASN][1000 genomes]
rs56851478	0.93[ASN][1000 genomes]
rs57323610	1.00[ASN][1000 genomes]
rs57369490	0.97[ASN][1000 genomes]
rs57492989	1.00[ASN][1000 genomes]
rs58011998	0.87[ASN][1000 genomes]
rs58319797	0.87[ASN][1000 genomes]
rs58469240	0.93[ASN][1000 genomes]
rs58822458	0.87[ASN][1000 genomes]
rs58852948	0.87[ASN][1000 genomes]
rs59290277	0.93[ASN][1000 genomes]
rs59315868	0.87[ASN][1000 genomes]
rs59494471	0.81[ASN][1000 genomes]
rs59581221	0.93[ASN][1000 genomes]
rs59602427	0.87[ASN][1000 genomes]
rs60327543	0.87[ASN][1000 genomes]
rs60714423	0.97[ASN][1000 genomes]
rs60808750	0.81[ASN][1000 genomes]
rs60947765	0.87[ASN][1000 genomes]
rs60968925	0.87[ASN][1000 genomes]
rs61262987	1.00[ASN][1000 genomes]
rs61677699	1.00[ASN][1000 genomes]
rs61705676	1.00[ASN][1000 genomes]
rs73404094	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv8196	chr7:104763559-105155978	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv34580	chr7:104763580-105153242	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv2758127	chr7:104766707-105110581	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104678000-104812200	Strong transcription	Dnd41	blood
2	chr7:104753800-104822000	Weak transcription	Small Intestine	intestine
3	chr7:104754400-104850400	Weak transcription	Fetal Kidney	kidney
4	chr7:104780000-104818800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:104780200-104818800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:104782600-104814000	Weak transcription	Colonic Mucosa	Colon
7	chr7:104782800-104845600	Weak transcription	Spleen	Spleen
8	chr7:104784200-104810400	Weak transcription	NHLF	lung
9	chr7:104784400-104818800	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:104786400-104812200	Weak transcription	Fetal Intestine Small	intestine
11	chr7:104787000-104813800	Weak transcription	Right Atrium	heart
12	chr7:104787600-104813400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr7:104791000-104813800	Weak transcription	Pancreas	Pancrea
14	chr7:104796000-104810200	Strong transcription	Fetal Thymus	thymus
15	chr7:104799800-104811000	Weak transcription	Esophagus	oesophagus
16	chr7:104799800-104813800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:104802000-104810800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr7:104802400-104810200	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr7:104803800-104810200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr7:104804400-104810200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr7:104805000-104818600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr7:104805200-104810200	Strong transcription	Left Ventricle	heart
23	chr7:104805800-104813800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:104806400-104812800	Weak transcription	Aorta	Aorta
25	chr7:104806400-104813800	Weak transcription	Gastric	stomach
26	chr7:104806400-104813800	Weak transcription	Psoas Muscle	Psoas
27	chr7:104806400-104814000	Weak transcription	Right Ventricle	heart
28	chr7:104806400-104819000	Weak transcription	Lung	lung
29	chr7:104806400-104838200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr7:104806600-104811200	Weak transcription	GM12878-XiMat	blood
31	chr7:104806600-104811400	Weak transcription	Fetal Lung	lung
32	chr7:104806600-104811600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr7:104806600-104836800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:104806600-104842000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr7:104807600-104812600	Weak transcription	Brain Hippocampus Middle	brain
36	chr7:104807600-104829800	Weak transcription	Thymus	Thymus
37	chr7:104807800-104810200	Weak transcription	Brain Germinal Matrix	brain
38	chr7:104807800-104811000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr7:104807800-104811200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr7:104807800-104812000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr7:104807800-104813000	Weak transcription	Brain Angular Gyrus	brain
42	chr7:104807800-104815000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr7:104807800-104816400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr7:104807800-104818800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr7:104807800-104819800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr7:104808000-104810200	Weak transcription	HUVEC	blood vessel
47	chr7:104808000-104810800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr7:104808000-104811800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr7:104808000-104812000	Weak transcription	Brain Substantia Nigra	brain
50	chr7:104808000-104813000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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