Variant report

Variant	rs61705676
Chromosome Location	chr7:104843430-104843431
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104835386..104838119-chr7:104841515..104843730,2	K562	blood:
2	chr7:104841876..104843481-chr7:104848260..104849927,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs2073550	0.83[ASN][1000 genomes]
rs2240456	0.93[ASN][1000 genomes]
rs2240462	1.00[ASN][1000 genomes]
rs2240464	0.97[ASN][1000 genomes]
rs2299296	0.93[ASN][1000 genomes]
rs2299300	0.83[ASN][1000 genomes]
rs2299301	0.83[ASN][1000 genomes]
rs2299302	0.97[ASN][1000 genomes]
rs2299307	1.00[ASN][1000 genomes]
rs2299310	0.94[ASN][1000 genomes]
rs2299317	0.87[ASN][1000 genomes]
rs2299318	0.87[ASN][1000 genomes]
rs2299329	0.81[ASN][1000 genomes]
rs28722876	0.93[ASN][1000 genomes]
rs3735370	0.87[ASN][1000 genomes]
rs3735371	0.87[ASN][1000 genomes]
rs3779206	0.87[ASN][1000 genomes]
rs3779211	1.00[ASN][1000 genomes]
rs3801280	0.87[ASN][1000 genomes]
rs3801286	0.94[ASN][1000 genomes]
rs3801287	1.00[ASN][1000 genomes]
rs56318802	0.94[ASN][1000 genomes]
rs56654846	1.00[ASN][1000 genomes]
rs56666353	1.00[ASN][1000 genomes]
rs56676421	1.00[ASN][1000 genomes]
rs56851478	0.93[ASN][1000 genomes]
rs57212372	0.87[ASN][1000 genomes]
rs57323610	1.00[ASN][1000 genomes]
rs57369490	0.97[ASN][1000 genomes]
rs57492989	1.00[ASN][1000 genomes]
rs58011998	0.87[ASN][1000 genomes]
rs58319797	0.87[ASN][1000 genomes]
rs58469240	0.93[ASN][1000 genomes]
rs58550581	0.87[ASN][1000 genomes]
rs58822458	0.87[ASN][1000 genomes]
rs58852948	0.87[ASN][1000 genomes]
rs59042853	0.87[ASN][1000 genomes]
rs59290277	0.93[ASN][1000 genomes]
rs59315868	0.87[ASN][1000 genomes]
rs59494471	0.81[ASN][1000 genomes]
rs59581221	0.93[ASN][1000 genomes]
rs59602427	0.87[ASN][1000 genomes]
rs60101098	0.87[ASN][1000 genomes]
rs60327543	0.87[ASN][1000 genomes]
rs60676837	0.87[ASN][1000 genomes]
rs60714423	0.97[ASN][1000 genomes]
rs60808750	0.81[ASN][1000 genomes]
rs60947765	0.87[ASN][1000 genomes]
rs60968925	0.87[ASN][1000 genomes]
rs61262987	1.00[ASN][1000 genomes]
rs61677699	1.00[ASN][1000 genomes]
rs73404094	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv8196	chr7:104763559-105155978	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv34580	chr7:104763580-105153242	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv2758127	chr7:104766707-105110581	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv932138	chr7:104826194-105152816	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104754400-104850400	Weak transcription	Fetal Kidney	kidney
2	chr7:104782800-104845600	Weak transcription	Spleen	Spleen
3	chr7:104822000-104858800	Weak transcription	Gastric	stomach
4	chr7:104823600-104848600	Strong transcription	Dnd41	blood
5	chr7:104827400-104850400	Weak transcription	Aorta	Aorta
6	chr7:104828600-104851000	Weak transcription	Stomach Mucosa	stomach
7	chr7:104828800-104850000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr7:104830000-104843600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr7:104830600-104844800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:104830600-104850600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr7:104831200-104851000	Weak transcription	Pancreas	Pancrea
12	chr7:104832600-104846200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr7:104833800-104850000	Weak transcription	Fetal Brain Female	brain
14	chr7:104834200-104846000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr7:104834200-104850000	Weak transcription	Brain Germinal Matrix	brain
16	chr7:104834600-104846800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:104834600-104851000	Weak transcription	Small Intestine	intestine
18	chr7:104835600-104845200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr7:104836600-104846400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr7:104837400-104846200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr7:104837600-104844200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr7:104838000-104843600	Weak transcription	Lung	lung
23	chr7:104838000-104844200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr7:104838000-104849800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:104838400-104843800	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr7:104838600-104845200	Weak transcription	Colon Smooth Muscle	Colon
27	chr7:104838600-104849800	Weak transcription	Fetal Brain Male	brain
28	chr7:104838600-104850400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr7:104839000-104845400	Weak transcription	Placenta	Placenta
30	chr7:104839000-104846800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr7:104839000-104849800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:104839200-104844000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr7:104839400-104843600	Weak transcription	Right Atrium	heart
34	chr7:104839400-104858400	Weak transcription	NHLF	lung
35	chr7:104839600-104844000	Strong transcription	Primary B cells from peripheral blood	blood
36	chr7:104839600-104845600	Weak transcription	Osteobl	bone
37	chr7:104839600-104846200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr7:104839600-104846400	Weak transcription	NH-A	brain
39	chr7:104839600-104846400	Weak transcription	NHDF-Ad	bronchial
40	chr7:104839600-104850600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr7:104839600-104857200	Weak transcription	A549	lung
42	chr7:104839800-104843600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:104840000-104843600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr7:104840000-104844400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr7:104840000-104844800	Strong transcription	Fetal Thymus	thymus
46	chr7:104840000-104844800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr7:104840000-104845200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr7:104840000-104850000	Weak transcription	HSMM	muscle
49	chr7:104840200-104845200	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr7:104840400-104844200	Strong transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links