Variant report

Variant	rs3762000
Chromosome Location	chr6:143792078-143792079
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143783190..143786094-chr6:143789644..143792866,3	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1065355	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs10782288	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10782289	0.92[EUR][1000 genomes]
rs10809	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs12196227	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs12199192	0.91[EUR][1000 genomes]
rs1338533	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1424922	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1978529	0.91[EUR][1000 genomes]
rs2143137	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs2272924	0.81[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2294505	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs2294506	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3762001	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs3762002	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs3789790	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs3789791	0.88[EUR][1000 genomes]
rs3804538	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs3804539	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs3804544	0.83[EUR][1000 genomes]
rs4895615	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4896659	1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4896660	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6924268	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6926733	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6930325	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6935346	0.94[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6935618	0.94[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7741976	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs7751011	0.87[EUR][1000 genomes]
rs9321913	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs9321914	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9373393	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376750	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs9376753	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs9390094	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs9390096	0.87[CEU][hapmap]
rs9399442	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9399443	0.92[EUR][1000 genomes]
rs9403492	0.82[EUR][1000 genomes]
rs9403494	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs9403496	0.94[CEU][hapmap];0.90[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3762000	PEX3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143811600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:143772800-143796600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:143772800-143798600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:143772800-143815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:143772800-143821200	Weak transcription	Psoas Muscle	Psoas
7	chr6:143773000-143793400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:143773000-143793600	Weak transcription	HSMMtube	muscle
9	chr6:143773000-143797400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:143773000-143801400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:143773000-143811600	Weak transcription	Right Ventricle	heart
12	chr6:143773000-143814600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:143773000-143814800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:143773000-143815000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:143773000-143815000	Weak transcription	Colonic Mucosa	Colon
16	chr6:143773200-143793000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:143773200-143793000	Weak transcription	Brain Substantia Nigra	brain
18	chr6:143773200-143793600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:143773200-143827000	Weak transcription	Brain Germinal Matrix	brain
20	chr6:143773400-143792800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:143773400-143796800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:143773400-143814200	Weak transcription	K562	blood
23	chr6:143773400-143814600	Weak transcription	HUVEC	blood vessel
24	chr6:143773400-143814800	Weak transcription	Hela-S3	cervix
25	chr6:143773400-143815000	Weak transcription	A549	lung
26	chr6:143773400-143818200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
28	chr6:143774400-143792800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr6:143774400-143819400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr6:143775000-143796200	Weak transcription	Fetal Brain Female	brain
31	chr6:143776200-143796400	Weak transcription	Brain Hippocampus Middle	brain
32	chr6:143777800-143796800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:143778200-143793000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:143778800-143794200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr6:143779000-143794000	Weak transcription	GM12878-XiMat	blood
36	chr6:143779000-143818200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:143779200-143816800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr6:143779400-143794200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:143779400-143796000	Weak transcription	Fetal Kidney	kidney
40	chr6:143779400-143804600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:143779600-143793600	Weak transcription	NH-A	brain
42	chr6:143779600-143793600	Weak transcription	Osteobl	bone
43	chr6:143780200-143796200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:143781000-143832000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:143781200-143798000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr6:143781200-143800200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr6:143782200-143793600	Weak transcription	Colon Smooth Muscle	Colon
48	chr6:143782400-143793200	Weak transcription	Brain Anterior Caudate	brain
49	chr6:143782600-143793800	Weak transcription	Primary hematopoietic stem cells	blood
50	chr6:143782600-143793800	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links