Variant report

Variant	rs9390094
Chromosome Location	chr6:143784703-143784704
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143783229..143785131-chr6:143811655..143813802,2	K562	blood:
2	chr6:143782388..143784725-chr6:143785490..143787172,2	MCF-7	breast:
3	chr6:143783190..143786094-chr6:143789644..143792866,3	K562	blood:
4	chr6:143781318..143783758-chr6:143784229..143785945,2	MCF-7	breast:
5	chr6:143770421..143772102-chr6:143784694..143787391,2	MCF-7	breast:
6	chr6:143770284..143773615-chr6:143782620..143784981,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223203	Chromatin interaction
ENSG00000229036	Chromatin interaction
ENSG00000189007	Chromatin interaction
ENSG00000034693	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1061220	0.87[JPT][hapmap]
rs1065355	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10782288	0.92[EUR][1000 genomes]
rs10782289	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10809	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12196227	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12199192	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338533	0.89[EUR][1000 genomes]
rs1424922	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1978529	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2143137	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2272924	0.90[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes]
rs2294505	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2294506	1.00[CEU][hapmap]
rs2496593	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs3088203	0.87[JPT][hapmap]
rs3761999	0.82[JPT][hapmap]
rs3762000	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs3762001	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3762002	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3789789	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3789790	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3789791	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3804538	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3804539	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3804544	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4895612	0.81[JPT][hapmap]
rs4895614	0.81[JPT][hapmap]
rs4895615	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4896656	0.81[JPT][hapmap]
rs4896659	0.91[EUR][1000 genomes]
rs4896660	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6924268	0.92[EUR][1000 genomes]
rs6926733	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6929191	0.81[JPT][hapmap]
rs6930325	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6935346	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6935618	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs7741976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7751011	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9321913	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9321914	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9373391	0.82[JPT][hapmap]
rs9373393	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9376750	0.90[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9376753	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9390092	0.81[JPT][hapmap]
rs9390096	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs9399442	0.90[EUR][1000 genomes]
rs9399443	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403492	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143790000	Weak transcription	Pancreas	Pancrea
2	chr6:143772600-143790000	Weak transcription	Spleen	Spleen
3	chr6:143772600-143791200	Weak transcription	Lung	lung
4	chr6:143772600-143811600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:143772800-143796600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:143772800-143798600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:143772800-143815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:143772800-143821200	Weak transcription	Psoas Muscle	Psoas
10	chr6:143773000-143791400	Weak transcription	Thymus	Thymus
11	chr6:143773000-143793400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:143773000-143793600	Weak transcription	HSMMtube	muscle
13	chr6:143773000-143797400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:143773000-143801400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:143773000-143811600	Weak transcription	Right Ventricle	heart
16	chr6:143773000-143814600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:143773000-143814800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:143773000-143815000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:143773000-143815000	Weak transcription	Colonic Mucosa	Colon
20	chr6:143773200-143793000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:143773200-143793000	Weak transcription	Brain Substantia Nigra	brain
22	chr6:143773200-143793600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr6:143773200-143827000	Weak transcription	Brain Germinal Matrix	brain
24	chr6:143773400-143791400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:143773400-143791400	Weak transcription	Brain Angular Gyrus	brain
26	chr6:143773400-143792800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:143773400-143796800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr6:143773400-143814200	Weak transcription	K562	blood
29	chr6:143773400-143814600	Weak transcription	HUVEC	blood vessel
30	chr6:143773400-143814800	Weak transcription	Hela-S3	cervix
31	chr6:143773400-143815000	Weak transcription	A549	lung
32	chr6:143773400-143818200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
34	chr6:143773600-143785000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr6:143774400-143792800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr6:143774400-143819400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr6:143775000-143796200	Weak transcription	Fetal Brain Female	brain
38	chr6:143776200-143796400	Weak transcription	Brain Hippocampus Middle	brain
39	chr6:143777800-143796800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:143778200-143793000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:143778800-143794200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr6:143779000-143794000	Weak transcription	GM12878-XiMat	blood
43	chr6:143779000-143818200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:143779200-143790000	Weak transcription	Small Intestine	intestine
45	chr6:143779200-143816800	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr6:143779400-143794200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:143779400-143796000	Weak transcription	Fetal Kidney	kidney
48	chr6:143779400-143804600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:143779600-143787600	Weak transcription	Fetal Heart	heart
50	chr6:143779600-143791600	Weak transcription	NHDF-Ad	bronchial

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