Variant report

Variant	rs9321913
Chromosome Location	chr6:143760155-143760156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143758626..143760810-chr6:143770211..143772331,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189007	Chromatin interaction
ENSG00000223203	Chromatin interaction
ENSG00000034693	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1061220	0.84[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap]
rs1065355	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10782288	0.82[EUR][1000 genomes]
rs10782289	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10809	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12196227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12199192	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1338533	0.82[EUR][1000 genomes]
rs1424922	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs1978529	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2143137	0.82[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs2272924	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs2294505	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2294506	0.89[CEU][hapmap]
rs2496593	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs3088203	0.84[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap]
rs3761999	0.81[JPT][hapmap]
rs3762000	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs3762001	0.83[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs3762002	0.83[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs3789790	0.83[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs3789791	0.87[EUR][1000 genomes]
rs3804538	0.89[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3804539	0.89[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3804544	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4895612	0.84[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap]
rs4895614	0.84[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap]
rs4895615	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs4896656	0.84[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap]
rs4896659	0.82[EUR][1000 genomes]
rs4896660	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs6924268	0.82[EUR][1000 genomes]
rs6926733	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs6929191	0.84[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap]
rs6930325	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs6935346	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs6935618	0.89[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];0.84[EUR][1000 genomes]
rs7741976	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7751011	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9321914	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs9373391	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs9373393	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs9376750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376753	0.83[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs9390092	0.84[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap]
rs9390094	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390096	0.83[CEU][hapmap]
rs9399442	0.84[EUR][1000 genomes]
rs9399443	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403492	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403494	0.89[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403496	0.89[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9321913	PEX3	Cis_1M	lymphoblastoid	RTeQTL
rs9321913	HIVEP2	cis	parietal	SCAN

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143726800-143765000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:143733200-143770400	Weak transcription	A549	lung
3	chr6:143742400-143770800	Weak transcription	Spleen	Spleen
4	chr6:143742800-143770200	Weak transcription	Psoas Muscle	Psoas
5	chr6:143744400-143770800	Weak transcription	Left Ventricle	heart
6	chr6:143744800-143760800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:143745800-143770600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:143747400-143762800	Strong transcription	K562	blood
9	chr6:143747400-143770600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:143748000-143770400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr6:143748200-143770600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:143748400-143762600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:143748400-143762600	Weak transcription	Osteobl	bone
14	chr6:143748400-143770400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:143748400-143770600	Weak transcription	Fetal Kidney	kidney
16	chr6:143748400-143770600	Weak transcription	NHDF-Ad	bronchial
17	chr6:143748400-143770600	Weak transcription	NHLF	lung
18	chr6:143749200-143760200	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:143749400-143762800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:143749400-143770400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:143749600-143770800	Weak transcription	Esophagus	oesophagus
22	chr6:143749800-143770400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr6:143750800-143762800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:143750800-143770200	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:143750800-143770200	Weak transcription	Thymus	Thymus
26	chr6:143751000-143770800	Weak transcription	HSMMtube	muscle
27	chr6:143751400-143761000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:143751600-143770200	Weak transcription	Fetal Intestine Small	intestine
29	chr6:143751600-143770400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:143751600-143770800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:143752000-143763000	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:143752200-143762800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:143752200-143765000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr6:143752200-143765000	Weak transcription	Small Intestine	intestine
35	chr6:143752400-143760200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:143752400-143770200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:143752600-143762600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr6:143752600-143766400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:143752600-143770600	Weak transcription	Brain Substantia Nigra	brain
40	chr6:143753000-143770200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr6:143753200-143760200	Strong transcription	Primary T cells from cord blood	blood
42	chr6:143753800-143761000	Weak transcription	Aorta	Aorta
43	chr6:143753800-143762600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr6:143753800-143770400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr6:143754000-143765000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr6:143754000-143770200	Weak transcription	Hela-S3	cervix
47	chr6:143754200-143770400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr6:143755000-143760600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:143755200-143770800	Weak transcription	Gastric	stomach
50	chr6:143755200-143770800	Weak transcription	Ovary	ovary

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