Variant report

Variant	rs9373391
Chromosome Location	chr6:143766276-143766277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143761031..143767695-chr6:143768053..143772068,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223203	Chromatin interaction
ENSG00000189007	Chromatin interaction
ENSG00000034693	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1061220	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1065355	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs10809	0.80[JPT][hapmap]
rs1111355	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12196227	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs2143137	0.81[JPT][hapmap]
rs2272924	0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs2294505	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs2294506	0.81[JPT][hapmap]
rs2496590	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2496593	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3088203	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3761999	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3762001	0.81[JPT][hapmap]
rs3762002	0.81[JPT][hapmap]
rs3789790	0.81[JPT][hapmap]
rs3804538	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs3804539	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs3804544	0.87[JPT][hapmap]
rs4895612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4895614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896660	0.82[JPT][hapmap]
rs6929191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935346	0.81[JPT][hapmap]
rs6935618	0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7741976	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs7746655	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9321913	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs9373393	0.81[JPT][hapmap]
rs9376750	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs9376753	0.81[JPT][hapmap]
rs9390090	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9390092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9390094	0.82[JPT][hapmap]
rs9403494	0.81[JPT][hapmap]
rs9403496	0.81[JPT][hapmap]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143733200-143770400	Weak transcription	A549	lung
2	chr6:143742400-143770800	Weak transcription	Spleen	Spleen
3	chr6:143742800-143770200	Weak transcription	Psoas Muscle	Psoas
4	chr6:143744400-143770800	Weak transcription	Left Ventricle	heart
5	chr6:143745800-143770600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:143747400-143770600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:143748000-143770400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:143748200-143770600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:143748400-143770400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:143748400-143770600	Weak transcription	Fetal Kidney	kidney
11	chr6:143748400-143770600	Weak transcription	NHDF-Ad	bronchial
12	chr6:143748400-143770600	Weak transcription	NHLF	lung
13	chr6:143749400-143770400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:143749600-143770800	Weak transcription	Esophagus	oesophagus
15	chr6:143749800-143770400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:143750800-143770200	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:143750800-143770200	Weak transcription	Thymus	Thymus
18	chr6:143751000-143770800	Weak transcription	HSMMtube	muscle
19	chr6:143751600-143770200	Weak transcription	Fetal Intestine Small	intestine
20	chr6:143751600-143770400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:143751600-143770800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:143752400-143770200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:143752600-143766400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:143752600-143770600	Weak transcription	Brain Substantia Nigra	brain
25	chr6:143753000-143770200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr6:143753800-143770400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr6:143754000-143770200	Weak transcription	Hela-S3	cervix
28	chr6:143754200-143770400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:143755200-143770800	Weak transcription	Gastric	stomach
30	chr6:143755200-143770800	Weak transcription	Ovary	ovary
31	chr6:143755400-143770400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:143756000-143770600	Weak transcription	Fetal Brain Female	brain
33	chr6:143757600-143770200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr6:143757800-143766600	Weak transcription	Fetal Stomach	stomach
35	chr6:143757800-143771000	Weak transcription	Lung	lung
36	chr6:143758000-143766600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:143758000-143767800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:143758000-143770200	Weak transcription	Pancreas	Pancrea
39	chr6:143758000-143770400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:143758000-143770400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:143758000-143770800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr6:143758200-143770600	Weak transcription	Brain Anterior Caudate	brain
43	chr6:143759800-143770400	Weak transcription	HSMM	muscle
44	chr6:143760000-143766800	Weak transcription	Fetal Lung	lung
45	chr6:143760000-143769800	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr6:143760000-143769800	Weak transcription	HMEC	breast
47	chr6:143760000-143770200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:143760000-143770200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:143760000-143770200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:143760000-143770200	Weak transcription	Fetal Thymus	thymus

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