Variant report

Variant	rs7746655
Chromosome Location	chr6:143751998-143751999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143746726..143749507-chr6:143751426..143754883,4	K562	blood:
2	chr6:143749636..143752287-chr6:143752628..143754787,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1061220	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1111355	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2272924	0.83[ASN][1000 genomes]
rs2496590	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2496593	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3088203	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3761999	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4895612	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4895614	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4896656	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6929191	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6935618	0.83[ASN][1000 genomes]
rs9373391	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390090	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390092	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143706600-143757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143719200-143753200	Weak transcription	Aorta	Aorta
3	chr6:143726800-143765000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:143727600-143753200	Weak transcription	Ovary	ovary
5	chr6:143732600-143753200	Weak transcription	Hela-S3	cervix
6	chr6:143733200-143770400	Weak transcription	A549	lung
7	chr6:143739200-143752000	Weak transcription	GM12878-XiMat	blood
8	chr6:143739800-143753200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:143740200-143753400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:143741400-143754800	Weak transcription	HSMM	muscle
11	chr6:143742200-143753400	Weak transcription	Gastric	stomach
12	chr6:143742200-143754800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:143742400-143757000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:143742400-143757400	Weak transcription	Pancreas	Pancrea
15	chr6:143742400-143770800	Weak transcription	Spleen	Spleen
16	chr6:143742800-143770200	Weak transcription	Psoas Muscle	Psoas
17	chr6:143744200-143753000	Weak transcription	HUVEC	blood vessel
18	chr6:143744400-143752400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:143744400-143770800	Weak transcription	Left Ventricle	heart
20	chr6:143744600-143753200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:143744800-143760800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:143745800-143752600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr6:143745800-143753200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:143745800-143770600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:143746600-143759400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:143747400-143752800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:143747400-143762800	Strong transcription	K562	blood
28	chr6:143747400-143770600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:143747600-143752600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:143747600-143755000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:143747800-143753200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr6:143747800-143753200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr6:143747800-143753200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:143747800-143758800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr6:143748000-143759000	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr6:143748000-143770400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr6:143748200-143752800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:143748200-143753200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:143748200-143757400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:143748200-143770600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:143748400-143752800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:143748400-143752800	Weak transcription	Fetal Brain Male	brain
43	chr6:143748400-143753000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:143748400-143753200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr6:143748400-143757400	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr6:143748400-143757600	Weak transcription	Fetal Lung	lung
47	chr6:143748400-143758200	Weak transcription	NH-A	brain
48	chr6:143748400-143758400	Weak transcription	Primary B cells from cord blood	blood
49	chr6:143748400-143762600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr6:143748400-143762600	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links