Variant report

Variant	rs9390090
Chromosome Location	chr6:143744326-143744327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143737366..143741274-chr6:143742822..143747466,4	K562	blood:
2	chr6:143743693..143746219-chr6:143763844..143765507,2	K562	blood:
3	chr6:143729967..143733929-chr6:143743394..143746871,5	K562	blood:
4	chr6:143729967..143734343-chr6:143743394..143748641,6	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1061220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1065355	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs10809	0.86[JPT][hapmap]
rs1111355	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12196227	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs2143137	0.87[JPT][hapmap]
rs2272924	0.92[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs2294505	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs2496590	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2496593	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3088203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3761999	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3762001	0.87[JPT][hapmap]
rs3762002	0.87[JPT][hapmap]
rs3789790	0.87[JPT][hapmap]
rs3804538	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs3804539	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs3804544	0.93[JPT][hapmap]
rs4895612	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4895614	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4896656	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6929191	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6935618	0.92[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs7741976	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs7746655	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9321913	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs9373391	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9376750	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs9376753	0.87[JPT][hapmap]
rs9390092	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9390094	0.88[JPT][hapmap]
rs9403494	0.87[JPT][hapmap]
rs9403496	0.87[JPT][hapmap]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143706600-143757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143719200-143753200	Weak transcription	Aorta	Aorta
3	chr6:143724200-143748200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:143726800-143765000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:143727600-143753200	Weak transcription	Ovary	ovary
6	chr6:143731800-143747400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:143732600-143751000	Weak transcription	Fetal Intestine Small	intestine
8	chr6:143732600-143753200	Weak transcription	Hela-S3	cervix
9	chr6:143733200-143770400	Weak transcription	A549	lung
10	chr6:143733600-143747400	Weak transcription	K562	blood
11	chr6:143735000-143750800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:143737200-143749200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:143739200-143750800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:143739200-143752000	Weak transcription	GM12878-XiMat	blood
15	chr6:143739600-143749000	Weak transcription	HepG2	liver
16	chr6:143739800-143753200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:143740200-143753400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:143741400-143754800	Weak transcription	HSMM	muscle
19	chr6:143741600-143747400	Weak transcription	Osteobl	bone
20	chr6:143741800-143751000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:143742000-143750600	Weak transcription	Primary T cells from cord blood	blood
22	chr6:143742000-143750800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:143742000-143751000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:143742200-143753400	Weak transcription	Gastric	stomach
25	chr6:143742200-143754800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:143742400-143757000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:143742400-143757400	Weak transcription	Pancreas	Pancrea
28	chr6:143742400-143770800	Weak transcription	Spleen	Spleen
29	chr6:143742800-143770200	Weak transcription	Psoas Muscle	Psoas
30	chr6:143743800-143746600	Weak transcription	Fetal Stomach	stomach
31	chr6:143743800-143747000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:143744000-143747200	Weak transcription	HMEC	breast
33	chr6:143744000-143750600	Weak transcription	NHEK	skin
34	chr6:143744200-143744400	Enhancers	Left Ventricle	heart
35	chr6:143744200-143748800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:143744200-143753000	Weak transcription	HUVEC	blood vessel

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