Variant report

Variant	rs1111355
Chromosome Location	chr6:143730585-143730586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143729967..143734343-chr6:143743394..143748641,6	K562	blood:
2	chr6:143007799..143009416-chr6:143730553..143732188,2	K562	blood:
3	chr6:143553751..143554603-chr6:143730290..143730825,3	MCF-7	breast:
4	chr6:143730112..143731912-chr6:143738511..143740058,2	K562	blood:
5	chr6:143723801..143726542-chr6:143729112..143732083,2	K562	blood:
6	chr6:143729967..143733929-chr6:143743394..143746871,5	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1061220	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1065355	0.84[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap]
rs10809	0.86[JPT][hapmap]
rs12196227	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs2143137	0.87[JPT][hapmap]
rs2272924	0.92[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs2294505	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs2496590	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2496593	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3088203	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3761999	0.92[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3762001	0.87[JPT][hapmap]
rs3762002	0.87[JPT][hapmap]
rs3789790	0.87[JPT][hapmap]
rs3804538	0.84[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap]
rs3804539	0.84[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap]
rs3804544	0.93[JPT][hapmap]
rs4895612	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4895614	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4896656	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6929191	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6935618	0.92[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs7741976	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs7746655	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9321913	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs9321914	0.82[CHD][hapmap]
rs9373391	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9376750	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs9376753	0.87[JPT][hapmap]
rs9390090	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390092	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9390094	0.87[JPT][hapmap]
rs9403494	0.87[JPT][hapmap]
rs9403496	0.87[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1111355	ADAT2	cis	cerebellum	SCAN
rs1111355	KIAA1530	trans	cerebellum	SCAN
rs1111355	ADAT2	cis	parietal	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143706600-143757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143719200-143753200	Weak transcription	Aorta	Aorta
3	chr6:143723000-143730600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:143723400-143730600	Weak transcription	Hela-S3	cervix
5	chr6:143724000-143731800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:143724200-143748200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:143726600-143735000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:143726800-143765000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:143727600-143731400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:143727600-143731600	Weak transcription	NH-A	brain
11	chr6:143727600-143732000	Weak transcription	HSMMtube	muscle
12	chr6:143727600-143753200	Weak transcription	Ovary	ovary
13	chr6:143727800-143731600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:143728000-143731800	Weak transcription	HSMM	muscle
15	chr6:143728200-143735000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:143728800-143733000	Enhancers	NHEK	skin
17	chr6:143729800-143732200	Enhancers	A549	lung
18	chr6:143729800-143733200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:143729800-143735600	Enhancers	HepG2	liver
20	chr6:143730000-143731000	Enhancers	Osteobl	bone
21	chr6:143730200-143730600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:143730400-143730800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:143730400-143730800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:143730400-143730800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:143730400-143731600	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr6:143730400-143731800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:143730400-143733200	Enhancers	HMEC	breast

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