Variant report

Variant	rs1061220
Chromosome Location	chr6:143747270-143747271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143737366..143741274-chr6:143742822..143747466,4	K562	blood:
2	chr6:143746726..143749507-chr6:143752753..143754883,2	K562	blood:
3	chr6:143746726..143749507-chr6:143751426..143754883,4	K562	blood:
4	chr6:143729967..143734343-chr6:143743394..143748641,6	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1065355	0.84[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap]
rs10809	0.86[JPT][hapmap]
rs1111355	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12196227	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs2143137	0.87[JPT][hapmap]
rs2272924	0.92[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs2294505	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs2496590	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2496593	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3088203	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3761999	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3762001	0.87[JPT][hapmap]
rs3762002	0.87[JPT][hapmap]
rs3789790	0.87[JPT][hapmap]
rs3804538	0.84[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap]
rs3804539	0.84[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap]
rs3804544	0.93[JPT][hapmap]
rs4895612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4895614	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4896656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6929191	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6935618	0.92[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs7741976	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs7746655	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9321913	0.84[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap]
rs9373391	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9373393	0.82[CHD][hapmap]
rs9376750	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs9376753	0.87[JPT][hapmap]
rs9390090	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390092	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9390094	0.87[JPT][hapmap]
rs9403494	0.81[CHD][hapmap];0.87[JPT][hapmap]
rs9403496	0.81[CHD][hapmap];0.87[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1061220	ADAT2	cis	cerebellum	SCAN
rs1061220	KIAA1530	trans	cerebellum	SCAN
rs1061220	ADAT2	cis	parietal	SCAN

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143706600-143757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143719200-143753200	Weak transcription	Aorta	Aorta
3	chr6:143724200-143748200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:143726800-143765000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:143727600-143753200	Weak transcription	Ovary	ovary
6	chr6:143731800-143747400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:143732600-143751000	Weak transcription	Fetal Intestine Small	intestine
8	chr6:143732600-143753200	Weak transcription	Hela-S3	cervix
9	chr6:143733200-143770400	Weak transcription	A549	lung
10	chr6:143733600-143747400	Weak transcription	K562	blood
11	chr6:143735000-143750800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:143737200-143749200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:143739200-143750800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:143739200-143752000	Weak transcription	GM12878-XiMat	blood
15	chr6:143739600-143749000	Weak transcription	HepG2	liver
16	chr6:143739800-143753200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:143740200-143753400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:143741400-143754800	Weak transcription	HSMM	muscle
19	chr6:143741600-143747400	Weak transcription	Osteobl	bone
20	chr6:143741800-143751000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:143742000-143750600	Weak transcription	Primary T cells from cord blood	blood
22	chr6:143742000-143750800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:143742000-143751000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:143742200-143753400	Weak transcription	Gastric	stomach
25	chr6:143742200-143754800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:143742400-143757000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:143742400-143757400	Weak transcription	Pancreas	Pancrea
28	chr6:143742400-143770800	Weak transcription	Spleen	Spleen
29	chr6:143742800-143770200	Weak transcription	Psoas Muscle	Psoas
30	chr6:143744000-143750600	Weak transcription	NHEK	skin
31	chr6:143744200-143748800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:143744200-143753000	Weak transcription	HUVEC	blood vessel
33	chr6:143744400-143752400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:143744400-143770800	Weak transcription	Left Ventricle	heart
35	chr6:143744600-143753200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr6:143744800-143760800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr6:143745800-143752600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr6:143745800-143753200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr6:143745800-143770600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:143746600-143759400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:143746800-143749400	Weak transcription	Dnd41	blood
42	chr6:143747000-143747600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:143747000-143748400	Enhancers	Fetal Lung	lung
44	chr6:143747200-143747400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:143747200-143747400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr6:143747200-143747400	Enhancers	Fetal Brain Male	brain
47	chr6:143747200-143747800	Enhancers	NH-A	brain
48	chr6:143747200-143748200	Enhancers	Fetal Stomach	stomach
49	chr6:143747200-143748400	Enhancers	NHDF-Ad	bronchial
50	chr6:143747200-143748600	Enhancers	HMEC	breast

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