Variant report

Variant	rs6935346
Chromosome Location	chr6:143801674-143801675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143801164..143803858-chr6:143817519..143820066,2	K562	blood:
2	chr6:143801323..143803862-chr6:143812529..143814618,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1065355	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs10782288	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10782289	0.91[EUR][1000 genomes]
rs10809	0.88[CEU][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs12196227	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs12199192	0.92[EUR][1000 genomes]
rs1338533	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1424922	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1978529	0.90[EUR][1000 genomes]
rs2143137	0.94[CEU][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs2272924	0.89[CEU][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2294505	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2294506	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs3761999	0.81[JPT][hapmap]
rs3762000	0.94[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3762001	0.94[CEU][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs3762002	0.94[CEU][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs3789789	0.80[EUR][1000 genomes]
rs3789790	0.94[CEU][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs3789791	0.89[EUR][1000 genomes]
rs3804538	1.00[CEU][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes]
rs3804539	1.00[CEU][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes]
rs3804544	0.89[CEU][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs4895612	0.81[JPT][hapmap]
rs4895614	0.81[JPT][hapmap]
rs4895615	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4896656	0.81[JPT][hapmap]
rs4896659	0.94[JPT][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4896660	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6924268	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6926733	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6929191	0.81[JPT][hapmap]
rs6930325	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6935618	1.00[CEU][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7741976	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7751011	0.86[EUR][1000 genomes]
rs9321913	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs9321914	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9373391	0.81[JPT][hapmap]
rs9373393	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9376750	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs9376753	0.94[CEU][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs9390092	0.81[JPT][hapmap]
rs9390094	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9390096	0.94[CEU][hapmap]
rs9399442	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9399443	0.91[EUR][1000 genomes]
rs9403492	0.84[EUR][1000 genomes]
rs9403494	1.00[CEU][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs9403496	1.00[CEU][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6935346	HIVEP2	cis	parietal	SCAN
rs6935346	FUCA2	cis	parietal	SCAN
rs6935346	RAB32	cis	parietal	SCAN

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143811600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:143772800-143815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:143772800-143821200	Weak transcription	Psoas Muscle	Psoas
5	chr6:143773000-143811600	Weak transcription	Right Ventricle	heart
6	chr6:143773000-143814600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:143773000-143814800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:143773000-143815000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:143773000-143815000	Weak transcription	Colonic Mucosa	Colon
10	chr6:143773200-143827000	Weak transcription	Brain Germinal Matrix	brain
11	chr6:143773400-143814200	Weak transcription	K562	blood
12	chr6:143773400-143814600	Weak transcription	HUVEC	blood vessel
13	chr6:143773400-143814800	Weak transcription	Hela-S3	cervix
14	chr6:143773400-143815000	Weak transcription	A549	lung
15	chr6:143773400-143818200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
17	chr6:143774400-143819400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:143779000-143818200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:143779200-143816800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:143779400-143804600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:143781000-143832000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:143783000-143814600	Weak transcription	Fetal Intestine Small	intestine
23	chr6:143783200-143818400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:143784600-143814800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:143784800-143814800	Weak transcription	NHLF	lung
26	chr6:143790200-143811600	Weak transcription	Pancreas	Pancrea
27	chr6:143790200-143811600	Weak transcription	Spleen	Spleen
28	chr6:143790200-143814800	Weak transcription	Small Intestine	intestine
29	chr6:143790200-143831600	Weak transcription	Esophagus	oesophagus
30	chr6:143790200-143831600	Weak transcription	Gastric	stomach
31	chr6:143791000-143802200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:143791400-143802200	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr6:143791400-143802800	Strong transcription	Liver	Liver
34	chr6:143791600-143803400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:143791600-143811800	Weak transcription	Thymus	Thymus
36	chr6:143791800-143807000	Weak transcription	Ovary	ovary
37	chr6:143791800-143811600	Weak transcription	Lung	lung
38	chr6:143792600-143802200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:143792800-143814800	Weak transcription	NHDF-Ad	bronchial
40	chr6:143793000-143801800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:143793000-143802600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:143793200-143802200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:143793400-143802200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:143793600-143802600	Strong transcription	Placenta	Placenta
45	chr6:143793600-143810200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr6:143793600-143819400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:143794000-143814600	Weak transcription	NH-A	brain
48	chr6:143794400-143807200	Weak transcription	Brain Angular Gyrus	brain
49	chr6:143794400-143814800	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr6:143794400-143814800	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links