Variant report

Variant	rs7751011
Chromosome Location	chr6:143795383-143795384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143770605..143773508-chr6:143793974..143796033,2	K562	blood:

Variant related genes	Relation type
ENSG00000189007	Chromatin interaction
ENSG00000223203	Chromatin interaction
ENSG00000034693	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1065355	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10782288	0.87[EUR][1000 genomes]
rs10782289	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10809	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12196227	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12199192	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1338533	0.84[EUR][1000 genomes]
rs1424922	0.86[EUR][1000 genomes]
rs1978529	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2143137	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2294505	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3762000	0.87[EUR][1000 genomes]
rs3762001	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3762002	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3789789	0.80[EUR][1000 genomes]
rs3789790	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3789791	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3804538	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3804539	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3804544	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4895615	0.86[EUR][1000 genomes]
rs4896659	0.86[EUR][1000 genomes]
rs4896660	0.87[EUR][1000 genomes]
rs6924268	0.87[EUR][1000 genomes]
rs6926733	0.86[EUR][1000 genomes]
rs6930325	0.86[EUR][1000 genomes]
rs6935346	0.86[EUR][1000 genomes]
rs6935618	0.86[EUR][1000 genomes]
rs7741976	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9321913	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9321914	0.87[EUR][1000 genomes]
rs9373393	0.85[EUR][1000 genomes]
rs9376750	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9376753	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9390094	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9399442	0.86[EUR][1000 genomes]
rs9399443	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403492	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9403494	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403496	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7751011	PEX3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143811600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:143772800-143796600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:143772800-143798600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:143772800-143815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:143772800-143821200	Weak transcription	Psoas Muscle	Psoas
7	chr6:143773000-143797400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:143773000-143801400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:143773000-143811600	Weak transcription	Right Ventricle	heart
10	chr6:143773000-143814600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:143773000-143814800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:143773000-143815000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:143773000-143815000	Weak transcription	Colonic Mucosa	Colon
14	chr6:143773200-143827000	Weak transcription	Brain Germinal Matrix	brain
15	chr6:143773400-143796800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:143773400-143814200	Weak transcription	K562	blood
17	chr6:143773400-143814600	Weak transcription	HUVEC	blood vessel
18	chr6:143773400-143814800	Weak transcription	Hela-S3	cervix
19	chr6:143773400-143815000	Weak transcription	A549	lung
20	chr6:143773400-143818200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
22	chr6:143774400-143819400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:143775000-143796200	Weak transcription	Fetal Brain Female	brain
24	chr6:143776200-143796400	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:143777800-143796800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:143779000-143818200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:143779200-143816800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr6:143779400-143796000	Weak transcription	Fetal Kidney	kidney
29	chr6:143779400-143804600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:143780200-143796200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:143781000-143832000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:143781200-143798000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr6:143781200-143800200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr6:143782600-143796600	Weak transcription	HMEC	breast
35	chr6:143783000-143814600	Weak transcription	Fetal Intestine Small	intestine
36	chr6:143783200-143818400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:143783400-143795800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:143784600-143814800	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr6:143784800-143814800	Weak transcription	NHLF	lung
40	chr6:143789800-143795800	Weak transcription	NHEK	skin
41	chr6:143789800-143796200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:143789800-143797000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:143790200-143798000	Weak transcription	Left Ventricle	heart
44	chr6:143790200-143811600	Weak transcription	Pancreas	Pancrea
45	chr6:143790200-143811600	Weak transcription	Spleen	Spleen
46	chr6:143790200-143814800	Weak transcription	Small Intestine	intestine
47	chr6:143790200-143831600	Weak transcription	Esophagus	oesophagus
48	chr6:143790200-143831600	Weak transcription	Gastric	stomach
49	chr6:143791000-143801000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:143791000-143802200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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