Variant report

Variant	rs3770912
Chromosome Location	chr2:36638387-36638388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36608117..36609788-chr2:36637029..36638848,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10184083	0.81[ASN][1000 genomes]
rs10184188	0.83[ASN][1000 genomes]
rs11885390	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11891181	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12712501	0.93[ASN][1000 genomes]
rs34582671	0.92[ASN][1000 genomes]
rs3770911	0.88[ASN][1000 genomes]
rs3770919	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3770928	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3770935	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3770938	0.82[ASN][1000 genomes]
rs3770939	0.92[ASN][1000 genomes]
rs3770941	0.93[ASN][1000 genomes]
rs3770943	0.93[ASN][1000 genomes]
rs3821162	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4670145	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4670553	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67044425	0.92[ASN][1000 genomes]
rs72785173	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756915	chr2:36622906-36657305	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759041	chr2:36622906-36657305	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:36618600-36643000	Genic enhancers	Osteobl	bone
4	chr2:36624800-36643600	Weak transcription	Colonic Mucosa	Colon
5	chr2:36625600-36643800	Weak transcription	Fetal Intestine Small	intestine
6	chr2:36625800-36642200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:36626000-36643800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr2:36630200-36641000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:36631000-36639000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr2:36631000-36639600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr2:36631400-36639000	Genic enhancers	Muscle Satellite Cultured Cells	--
12	chr2:36631400-36639000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr2:36631600-36644600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:36631800-36639600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:36632000-36640200	Weak transcription	Fetal Brain Female	brain
16	chr2:36632200-36648000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr2:36632400-36639000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr2:36632400-36639600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr2:36633400-36638400	Enhancers	NH-A	brain
20	chr2:36633400-36639600	Enhancers	Adipose Nuclei	Adipose
21	chr2:36633400-36639800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr2:36633400-36640600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:36633600-36639200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr2:36633800-36639200	Enhancers	Fetal Lung	lung
25	chr2:36634800-36638800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr2:36635000-36638400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:36635000-36640600	Enhancers	NHDF-Ad	bronchial
28	chr2:36635200-36639600	Weak transcription	Brain Angular Gyrus	brain
29	chr2:36635200-36641000	Enhancers	Fetal Heart	heart
30	chr2:36635600-36638800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr2:36635600-36639200	Weak transcription	Gastric	stomach
32	chr2:36635600-36641800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr2:36635800-36639000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr2:36635800-36639200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr2:36635800-36641600	Weak transcription	Right Atrium	heart
36	chr2:36635800-36641800	Weak transcription	Placenta	Placenta
37	chr2:36635800-36643000	Weak transcription	Fetal Muscle Leg	muscle
38	chr2:36635800-36643800	Weak transcription	Fetal Intestine Large	intestine
39	chr2:36635800-36644000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr2:36635800-36647600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr2:36636000-36640200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr2:36636000-36640400	Weak transcription	Fetal Stomach	stomach
43	chr2:36636000-36642600	Weak transcription	HMEC	breast
44	chr2:36636000-36647600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr2:36636000-36647600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr2:36636400-36638400	Enhancers	Psoas Muscle	Psoas
47	chr2:36636400-36638400	Enhancers	HSMMtube	muscle
48	chr2:36636400-36638800	Transcr. at gene 5' and 3'	A549	lung
49	chr2:36636600-36638600	Enhancers	HepG2	liver
50	chr2:36636600-36638800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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