Variant report

Variant	rs72785173
Chromosome Location	chr2:36611356-36611357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10184083	0.97[ASN][1000 genomes]
rs10184188	0.98[ASN][1000 genomes]
rs11885390	0.83[ASN][1000 genomes]
rs11891181	0.83[ASN][1000 genomes]
rs12712499	0.90[ASN][1000 genomes]
rs12712501	0.90[ASN][1000 genomes]
rs34582671	0.89[ASN][1000 genomes]
rs3770912	0.84[ASN][1000 genomes]
rs3770919	0.84[ASN][1000 genomes]
rs3770928	0.83[ASN][1000 genomes]
rs3770935	0.83[ASN][1000 genomes]
rs3770939	0.89[ASN][1000 genomes]
rs3770941	0.90[ASN][1000 genomes]
rs3770943	0.90[ASN][1000 genomes]
rs3770949	0.92[ASN][1000 genomes]
rs3770962	0.81[ASN][1000 genomes]
rs3821162	0.83[ASN][1000 genomes]
rs3821166	0.90[ASN][1000 genomes]
rs4670145	0.83[ASN][1000 genomes]
rs4670553	0.83[ASN][1000 genomes]
rs67044425	0.89[ASN][1000 genomes]
rs67501694	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72785157	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:36600400-36612000	Genic enhancers	Osteobl	bone
3	chr2:36603800-36612600	Weak transcription	Fetal Brain Female	brain
4	chr2:36604000-36614400	Genic enhancers	HUVEC	blood vessel
5	chr2:36604000-36617000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr2:36604400-36614000	Weak transcription	HSMMtube	muscle
7	chr2:36604400-36615000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:36604400-36615400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr2:36604400-36615600	Weak transcription	Fetal Muscle Leg	muscle
10	chr2:36604400-36616400	Weak transcription	Gastric	stomach
11	chr2:36604400-36620600	Weak transcription	Fetal Brain Male	brain
12	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr2:36604600-36614800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:36604600-36617600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr2:36604600-36620800	Weak transcription	Brain Hippocampus Middle	brain
17	chr2:36604800-36614400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr2:36607000-36611600	Genic enhancers	NHLF	lung
19	chr2:36607600-36620800	Weak transcription	Pancreas	Pancrea
20	chr2:36607800-36615800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr2:36608000-36614000	Weak transcription	Hela-S3	cervix
22	chr2:36608000-36614600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr2:36608200-36612200	Weak transcription	Colon Smooth Muscle	Colon
24	chr2:36608600-36611600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:36608600-36612600	Weak transcription	Right Atrium	heart
26	chr2:36608600-36612600	Weak transcription	Small Intestine	intestine
27	chr2:36608600-36614000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr2:36608600-36614000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr2:36608600-36616200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr2:36608600-36616200	Weak transcription	Fetal Stomach	stomach
31	chr2:36608800-36611400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr2:36608800-36613000	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr2:36608800-36613400	Strong transcription	NH-A	brain
34	chr2:36608800-36613600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr2:36608800-36614200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr2:36608800-36615600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr2:36608800-36615600	Weak transcription	Fetal Kidney	kidney
38	chr2:36608800-36615600	Weak transcription	Fetal Lung	lung
39	chr2:36609000-36611800	Genic enhancers	HepG2	liver
40	chr2:36609000-36613000	Strong transcription	HSMM	muscle
41	chr2:36609000-36614000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr2:36609000-36614000	Genic enhancers	A549	lung
43	chr2:36609000-36615800	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr2:36609200-36611400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr2:36609200-36612600	Weak transcription	Fetal Heart	heart
46	chr2:36609200-36612800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr2:36609200-36614000	Weak transcription	Spleen	Spleen
48	chr2:36609200-36619800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr2:36609400-36611600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr2:36609400-36615600	Weak transcription	Fetal Intestine Small	intestine

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