Variant report

Variant	rs3770941
Chromosome Location	chr2:36616297-36616298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36613783..36616310-chr2:36620739..36623500,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10184083	0.87[ASN][1000 genomes]
rs10184188	0.89[ASN][1000 genomes]
rs11885390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11891181	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12712499	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs12712501	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34582671	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3770911	0.92[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs3770912	0.93[ASN][1000 genomes]
rs3770919	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3770928	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3770935	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3770938	0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs3770939	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3770943	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3770949	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3821162	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3821166	0.81[ASN][1000 genomes]
rs4670145	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4670553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs67044425	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67501694	0.84[ASN][1000 genomes]
rs72785173	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:36604000-36617000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr2:36604400-36616400	Weak transcription	Gastric	stomach
4	chr2:36604400-36620600	Weak transcription	Fetal Brain Male	brain
5	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:36604600-36617600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr2:36604600-36620800	Weak transcription	Brain Hippocampus Middle	brain
9	chr2:36607600-36620800	Weak transcription	Pancreas	Pancrea
10	chr2:36609200-36619800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:36609400-36620000	Weak transcription	Lung	lung
12	chr2:36610400-36617800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr2:36611600-36616800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:36611600-36619800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr2:36611600-36632400	Weak transcription	Esophagus	oesophagus
16	chr2:36611600-36635400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr2:36612000-36616600	Enhancers	NHLF	lung
18	chr2:36613000-36617000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr2:36613000-36624000	Weak transcription	Small Intestine	intestine
20	chr2:36613200-36616400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr2:36613400-36616400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:36613600-36617000	Enhancers	H1 Cell Line	embryonic stem cell
23	chr2:36613600-36617200	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr2:36613800-36617000	Genic enhancers	HepG2	liver
25	chr2:36614000-36616400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr2:36614000-36617400	Transcr. at gene 5' and 3'	A549	lung
27	chr2:36614000-36617600	Enhancers	Fetal Heart	heart
28	chr2:36614000-36617600	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr2:36614000-36617600	Genic enhancers	HSMM	muscle
30	chr2:36614000-36617800	Enhancers	Placenta Amnion	Placenta Amnion
31	chr2:36614200-36616400	Enhancers	NH-A	brain
32	chr2:36614200-36616800	Enhancers	Adipose Nuclei	Adipose
33	chr2:36614400-36616800	Weak transcription	Spleen	Spleen
34	chr2:36614800-36616400	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr2:36614800-36616400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr2:36614800-36616800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr2:36614800-36620000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr2:36614800-36620200	Weak transcription	Right Ventricle	heart
39	chr2:36614800-36621400	Weak transcription	Stomach Mucosa	stomach
40	chr2:36615000-36616400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr2:36615000-36616400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr2:36615000-36617400	Enhancers	Hela-S3	cervix
43	chr2:36615200-36616400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr2:36615200-36617000	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr2:36615400-36616600	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr2:36615400-36616800	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr2:36615400-36616800	Enhancers	HMEC	breast
48	chr2:36615400-36617400	Enhancers	Colon Smooth Muscle	Colon
49	chr2:36615400-36617800	Enhancers	Psoas Muscle	Psoas
50	chr2:36615600-36616400	Enhancers	Placenta	Placenta

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