Variant report

Variant	rs3770935
Chromosome Location	chr2:36625388-36625389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36583520..36585137-chr2:36624819..36626456,2	MCF-7	breast:
2	chr2:36624404..36627384-chr2:36629683..36631735,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150938	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10184188	0.81[ASN][1000 genomes]
rs11885390	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11891181	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12712499	0.90[JPT][hapmap]
rs12712501	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17018675	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs2023549	0.81[JPT][hapmap]
rs34582671	0.90[ASN][1000 genomes]
rs3770911	0.83[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs3770912	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3770919	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3770928	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3770938	0.83[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs3770939	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3770941	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3770943	0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3770949	1.00[JPT][hapmap]
rs3821162	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670145	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670553	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67044425	0.90[ASN][1000 genomes]
rs72785173	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756915	chr2:36622906-36657305	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759041	chr2:36622906-36657305	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:36611600-36632400	Weak transcription	Esophagus	oesophagus
5	chr2:36611600-36635400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:36616800-36631200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:36616800-36635000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:36617000-36633400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr2:36617200-36630800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr2:36617200-36631200	Weak transcription	Fetal Kidney	kidney
11	chr2:36617200-36633800	Weak transcription	Fetal Lung	lung
12	chr2:36617800-36630600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr2:36617800-36630600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:36618600-36643000	Genic enhancers	Osteobl	bone
15	chr2:36619800-36625400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:36620200-36626400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr2:36620200-36635000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:36620800-36629200	Genic enhancers	Muscle Satellite Cultured Cells	--
19	chr2:36621000-36630600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr2:36621000-36631400	Weak transcription	Fetal Brain Female	brain
21	chr2:36621000-36635000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr2:36621000-36635200	Weak transcription	Lung	lung
23	chr2:36621200-36628000	Weak transcription	Ovary	ovary
24	chr2:36621200-36629000	Weak transcription	Fetal Muscle Leg	muscle
25	chr2:36621200-36630800	Weak transcription	Spleen	Spleen
26	chr2:36621200-36634800	Weak transcription	Brain Hippocampus Middle	brain
27	chr2:36621200-36634800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr2:36621200-36635000	Weak transcription	Fetal Stomach	stomach
29	chr2:36622000-36626400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:36622600-36628000	Genic enhancers	NHDF-Ad	bronchial
31	chr2:36622600-36630600	Genic enhancers	HUVEC	blood vessel
32	chr2:36622800-36629000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr2:36622800-36629400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr2:36622800-36630600	Weak transcription	Colon Smooth Muscle	Colon
35	chr2:36622800-36631400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr2:36623000-36632200	Weak transcription	Right Atrium	heart
37	chr2:36623400-36626000	Enhancers	Stomach Mucosa	stomach
38	chr2:36623400-36629600	Strong transcription	Placenta	Placenta
39	chr2:36623600-36625400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr2:36623600-36625400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr2:36623600-36625600	Genic enhancers	HepG2	liver
42	chr2:36623600-36627200	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr2:36623600-36630800	Genic enhancers	NHLF	lung
44	chr2:36623800-36626000	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr2:36624000-36625400	Enhancers	Fetal Intestine Large	intestine
46	chr2:36624000-36625600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr2:36624000-36625600	Enhancers	Gastric	stomach
48	chr2:36624000-36625600	Genic enhancers	Left Ventricle	heart
49	chr2:36624000-36625800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr2:36624000-36626800	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links