Variant report

Variant	rs3770919
Chromosome Location	chr2:36632460-36632461
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10184083	0.81[ASN][1000 genomes]
rs10184188	0.83[ASN][1000 genomes]
rs11885390	1.00[ASW][hapmap];0.94[CEU][hapmap];0.91[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11891181	1.00[ASW][hapmap];0.94[CEU][hapmap];0.91[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12712499	0.91[JPT][hapmap]
rs12712501	1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17018675	0.81[CHB][hapmap]
rs34582671	0.92[ASN][1000 genomes]
rs3770911	0.83[CHB][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs3770912	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3770928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3770935	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3770938	0.91[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs3770939	1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3770941	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3770943	0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3770949	1.00[JPT][hapmap]
rs3821162	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4670145	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4670553	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67044425	0.92[ASN][1000 genomes]
rs72785173	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756915	chr2:36622906-36657305	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759041	chr2:36622906-36657305	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:36611600-36635400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:36616800-36635000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:36617000-36633400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr2:36617200-36633800	Weak transcription	Fetal Lung	lung
7	chr2:36618600-36643000	Genic enhancers	Osteobl	bone
8	chr2:36620200-36635000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:36621000-36635000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr2:36621000-36635200	Weak transcription	Lung	lung
11	chr2:36621200-36634800	Weak transcription	Brain Hippocampus Middle	brain
12	chr2:36621200-36634800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr2:36621200-36635000	Weak transcription	Fetal Stomach	stomach
14	chr2:36624200-36635000	Weak transcription	Brain Angular Gyrus	brain
15	chr2:36624600-36634600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:36624800-36643600	Weak transcription	Colonic Mucosa	Colon
17	chr2:36625200-36635000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr2:36625600-36635600	Weak transcription	Fetal Intestine Large	intestine
19	chr2:36625600-36643800	Weak transcription	Fetal Intestine Small	intestine
20	chr2:36625800-36642200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr2:36626000-36643800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr2:36626600-36637800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr2:36627200-36634000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr2:36627800-36634600	Weak transcription	Fetal Heart	heart
25	chr2:36628600-36634200	Enhancers	NHDF-Ad	bronchial
26	chr2:36629000-36632800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr2:36629200-36633400	Weak transcription	Ovary	ovary
28	chr2:36629400-36635400	Weak transcription	Fetal Muscle Leg	muscle
29	chr2:36630000-36632800	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr2:36630200-36632800	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr2:36630200-36633000	Enhancers	Aorta	Aorta
32	chr2:36630200-36641000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr2:36630600-36632600	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr2:36630600-36633200	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr2:36630800-36633400	Enhancers	NHLF	lung
36	chr2:36630800-36635200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr2:36631000-36632600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr2:36631000-36632800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr2:36631000-36632800	Enhancers	Primary B cells from peripheral blood	blood
40	chr2:36631000-36634800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr2:36631000-36638200	Weak transcription	Colon Smooth Muscle	Colon
42	chr2:36631000-36639000	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr2:36631000-36639600	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr2:36631200-36632800	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr2:36631200-36635200	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr2:36631400-36633800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr2:36631400-36635000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr2:36631400-36637000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr2:36631400-36639000	Genic enhancers	Muscle Satellite Cultured Cells	--
50	chr2:36631400-36639000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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