Variant report

Variant	rs3772243
Chromosome Location	chr3:156068907-156068908
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10513486	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12630004	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1874952	0.82[EUR][1000 genomes]
rs2122419	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28413487	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3772236	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4680258	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6795493	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7653024	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1810325	chr3:156061497-156081835	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156058600-156071600	Weak transcription	Aorta	Aorta
2	chr3:156062400-156069600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:156067000-156070600	Weak transcription	Right Atrium	heart
4	chr3:156067600-156069800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:156068600-156069200	Enhancers	Left Ventricle	heart
6	chr3:156068600-156069200	Enhancers	HUVEC	blood vessel
7	chr3:156068600-156069400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr3:156068600-156069400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:156068600-156069400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:156068800-156069400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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