Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1027530	0.94[JPT][hapmap]
rs10513486	0.84[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12630004	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[ASN][1000 genomes]
rs1375925	0.83[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs1375926	0.93[CHB][hapmap];0.84[CHD][hapmap]
rs1874952	0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs2167143	0.94[JPT][hapmap]
rs28413487	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3755625	0.87[JPT][hapmap]
rs3755627	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs3772231	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs3772233	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs3772236	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3772243	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3821415	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs4680258	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.92[ASN][1000 genomes]
rs4680259	0.86[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs6795493	0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7653024	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs882089	0.84[ASW][hapmap];0.86[CEU][hapmap];0.94[JPT][hapmap]
rs9859443	0.80[TSI][hapmap]
rs9874261	0.86[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156053000-156064800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:156053200-156061600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:156058400-156060000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:156058400-156060000	Enhancers	Brain Hippocampus Middle	brain
5	chr3:156058600-156071600	Weak transcription	Aorta	Aorta

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