Variant report

Variant	rs2167143
Chromosome Location	chr3:156017717-156017718
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156017399..156019270-chr3:156022267..156024641,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1027530	0.85[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10513486	0.85[CEU][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs12630004	0.92[CEU][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1375925	0.85[CEU][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs1874952	0.94[ASW][hapmap];0.92[CEU][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2122419	0.94[JPT][hapmap]
rs28413487	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3755625	0.94[JPT][hapmap];0.89[TSI][hapmap];0.81[ASN][1000 genomes]
rs3755627	0.85[CEU][hapmap];0.81[JPT][hapmap]
rs3772231	0.92[CEU][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs3772233	0.93[CEU][hapmap];0.81[JPT][hapmap]
rs3772236	0.93[CEU][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs3821415	0.88[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs4680258	0.93[CEU][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4680259	0.85[CEU][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs6795493	0.85[CEU][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs816550	0.82[ASN][1000 genomes]
rs882089	0.92[CEU][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9874261	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156010000-156024000	Weak transcription	Aorta	Aorta
2	chr3:156010000-156025400	Weak transcription	Pancreas	Pancrea
3	chr3:156013400-156019000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:156015400-156018400	Enhancers	Fetal Brain Male	brain
5	chr3:156015800-156021600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:156016200-156019800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:156016200-156020600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:156016800-156017800	Enhancers	Brain Cingulate Gyrus	brain
9	chr3:156016800-156018000	Enhancers	Fetal Muscle Leg	muscle
10	chr3:156016800-156018400	Enhancers	Brain Anterior Caudate	brain
11	chr3:156016800-156018400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:156016800-156019400	Enhancers	Brain Hippocampus Middle	brain
13	chr3:156016800-156019600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr3:156017000-156017800	Weak transcription	Fetal Brain Female	brain
15	chr3:156017000-156018400	Enhancers	Brain Angular Gyrus	brain
16	chr3:156017200-156018200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr3:156017200-156019000	Enhancers	Adipose Nuclei	Adipose
18	chr3:156017200-156020800	Weak transcription	Left Ventricle	heart
19	chr3:156017400-156018000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr3:156017400-156020800	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links