Variant report

Variant	rs9874261
Chromosome Location	chr3:156027552-156027553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156025571..156028067-chr3:156028592..156030728,2	MCF-7	breast:
2	chr3:156026382..156029375-chr3:156031485..156033087,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1027530	0.82[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs10513486	0.86[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12630004	0.94[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1375925	0.86[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap]
rs1375926	0.81[CHB][hapmap]
rs1874952	0.93[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2122419	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs2167143	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28413487	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3755625	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3755627	0.82[JPT][hapmap]
rs3772231	0.81[JPT][hapmap]
rs3772233	0.94[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs3772236	0.94[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3821415	0.94[JPT][hapmap]
rs4680258	0.94[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4680259	0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs6795493	0.88[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7653024	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs882089	0.93[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156021400-156035200	Weak transcription	Stomach Mucosa	stomach
2	chr3:156021800-156035800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:156022400-156029200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:156022800-156035600	Weak transcription	Brain Anterior Caudate	brain
5	chr3:156023800-156029200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:156025800-156029200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:156026000-156027600	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:156026000-156031200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:156026000-156031400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:156026200-156031200	Weak transcription	HMEC	breast
11	chr3:156026400-156027800	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr3:156026400-156031200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:156026400-156031200	Weak transcription	NHEK	skin
14	chr3:156026400-156038400	Weak transcription	Aorta	Aorta
15	chr3:156026600-156029200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr3:156027200-156027800	Enhancers	Fetal Heart	heart

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