Variant report

Variant	rs882089
Chromosome Location	chr3:156012679-156012680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1027530	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10513486	0.88[ASW][hapmap];0.93[CEU][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs12630004	1.00[CEU][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs1375925	0.88[ASW][hapmap];0.93[CEU][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs1874952	1.00[CEU][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs2122419	0.84[ASW][hapmap];0.86[CEU][hapmap];0.94[JPT][hapmap]
rs2167143	0.92[CEU][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3755625	1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap];0.84[ASN][1000 genomes]
rs3755627	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs3772231	0.85[CHB][hapmap];0.87[JPT][hapmap];0.83[TSI][hapmap]
rs3772233	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs3772236	0.87[CEU][hapmap];0.94[JPT][hapmap]
rs3821415	0.85[CHB][hapmap];0.88[JPT][hapmap];0.81[TSI][hapmap]
rs4680258	0.87[CEU][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes]
rs4680259	0.85[CHB][hapmap];0.88[JPT][hapmap];0.86[TSI][hapmap]
rs6795493	0.93[CEU][hapmap];0.94[JPT][hapmap]
rs9874261	0.93[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156008600-156013400	Active TSS	Brain Anterior Caudate	brain
2	chr3:156010000-156017000	Weak transcription	Right Atrium	heart
3	chr3:156010000-156024000	Weak transcription	Aorta	Aorta
4	chr3:156010000-156025400	Weak transcription	Pancreas	Pancrea
5	chr3:156010200-156012800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:156010200-156015400	Weak transcription	Fetal Brain Male	brain
7	chr3:156011800-156013000	Weak transcription	Brain Angular Gyrus	brain
8	chr3:156012200-156016800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:156012200-156016800	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:156012200-156017200	Weak transcription	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links