Variant report

Variant	rs4680259
Chromosome Location	chr3:156037384-156037385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1027530	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs10513486	0.86[CHB][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12629802	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12630004	0.86[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1375925	0.86[CHB][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs1375926	0.81[CHB][hapmap]
rs1874952	0.86[CHB][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2122419	0.86[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2167143	0.85[CEU][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs28413487	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3755625	0.81[CEU][hapmap];0.85[CHB][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.87[LWK][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3755627	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3772231	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.82[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3772233	0.81[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs3772236	0.81[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3821415	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap]
rs4680258	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6795493	0.81[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7653024	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs882089	0.85[CHB][hapmap];0.88[JPT][hapmap];0.86[TSI][hapmap]
rs9874261	0.94[JPT][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156026400-156038400	Weak transcription	Aorta	Aorta
2	chr3:156036000-156037600	Weak transcription	Brain Anterior Caudate	brain
3	chr3:156036000-156038400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:156036400-156038200	Weak transcription	NHEK	skin
5	chr3:156036400-156038400	Weak transcription	HMEC	breast
6	chr3:156036400-156041400	Weak transcription	Hela-S3	cervix
7	chr3:156037000-156037400	Enhancers	Fetal Heart	heart
8	chr3:156037000-156037400	Enhancers	Left Ventricle	heart
9	chr3:156037000-156037400	Enhancers	Right Atrium	heart
10	chr3:156037200-156037400	Enhancers	Brain Angular Gyrus	brain
11	chr3:156037200-156037600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:156037200-156039000	Enhancers	Brain Hippocampus Middle	brain
13	chr3:156037200-156040000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:156037200-156040000	Enhancers	Brain Cingulate Gyrus	brain
15	chr3:156037200-156040800	Enhancers	Brain Substantia Nigra	brain

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