Variant report
| Variant | rs3755627 |
|---|---|
| Chromosome Location | chr3:156046906-156046907 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:156037539..156041567-chr3:156043412..156048047,6 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1027530 | 0.92[CHB][hapmap] |
| rs10513486 | 0.86[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12629802 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12630004 | 0.87[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1375925 | 0.86[CHB][hapmap];0.87[JPT][hapmap] |
| rs1375926 | 0.81[CHB][hapmap] |
| rs1874952 | 0.86[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2122419 | 0.86[CHB][hapmap];0.87[JPT][hapmap] |
| rs2167143 | 0.85[CEU][hapmap];0.81[JPT][hapmap] |
| rs28413487 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3755625 | 0.81[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3772231 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3772233 | 0.87[CHB][hapmap];1.00[JPT][hapmap] |
| rs3772236 | 0.87[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3821415 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap] |
| rs4680258 | 0.87[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4680259 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6795493 | 0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7653024 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs882089 | 0.85[CHB][hapmap];0.81[JPT][hapmap] |
| rs9874261 | 0.82[JPT][hapmap];0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014755 | chr3:155889430-156411894 | Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| 2 | nsv877682 | chr3:156019961-156077514 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv3438569 | chr3:156046857-156047641 | Inactive region | Chromatin interactive region | n/a | n/a | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
