Variant report

Variant	rs28413487
Chromosome Location	chr3:156038918-156038919
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10513486	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12629802	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12630004	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1874952	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2122419	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2167143	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3772231	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3772236	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3772243	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4680258	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4680259	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6795493	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7653024	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9874261	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156036400-156041400	Weak transcription	Hela-S3	cervix
2	chr3:156037200-156039000	Enhancers	Brain Hippocampus Middle	brain
3	chr3:156037200-156040000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:156037200-156040000	Enhancers	Brain Cingulate Gyrus	brain
5	chr3:156037200-156040800	Enhancers	Brain Substantia Nigra	brain
6	chr3:156037400-156039800	Weak transcription	Left Ventricle	heart
7	chr3:156037600-156039000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:156037600-156040200	Enhancers	Brain Anterior Caudate	brain
9	chr3:156037800-156040000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:156037800-156040400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr3:156038400-156039200	Enhancers	Rectal Smooth Muscle	rectum
12	chr3:156038400-156040000	Enhancers	Brain Angular Gyrus	brain
13	chr3:156038600-156039600	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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