Variant report

Variant	rs4680258
Chromosome Location	chr3:156036171-156036172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1027530	0.88[JPT][hapmap]
rs10513486	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12629802	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12630004	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375925	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1375926	0.93[CHB][hapmap]
rs1874952	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2122419	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.92[ASN][1000 genomes]
rs2167143	0.93[CEU][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28413487	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3755625	0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs3755627	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs3772231	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3772233	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs3772236	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3772243	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3821415	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4680259	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6795493	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7653024	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs882089	0.87[CEU][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes]
rs9874261	0.94[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156026400-156038400	Weak transcription	Aorta	Aorta
2	chr3:156030600-156036400	Enhancers	Hela-S3	cervix
3	chr3:156033200-156037000	Weak transcription	Left Ventricle	heart
4	chr3:156034000-156036600	Enhancers	HUVEC	blood vessel
5	chr3:156034400-156036200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:156034400-156036200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:156034400-156036400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:156034600-156036400	Enhancers	HMEC	breast
9	chr3:156034600-156036400	Enhancers	NHEK	skin
10	chr3:156035000-156036200	Enhancers	Colon Smooth Muscle	Colon
11	chr3:156035000-156036400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr3:156035000-156036400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:156035000-156036400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:156035000-156036600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:156035200-156036400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:156035400-156036400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr3:156035400-156036400	Enhancers	H9 Cell Line	embryonic stem cell
18	chr3:156035400-156037000	Weak transcription	Fetal Heart	heart
19	chr3:156035600-156036200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:156035600-156037000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr3:156035800-156036400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:156035800-156037200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr3:156036000-156037600	Weak transcription	Brain Anterior Caudate	brain
24	chr3:156036000-156038400	Weak transcription	Rectal Smooth Muscle	rectum

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