Variant report

Variant	rs6795493
Chromosome Location	chr3:156053311-156053312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1027530	0.83[CEU][hapmap];0.94[JPT][hapmap]
rs10513486	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12629802	0.87[EUR][1000 genomes]
rs12630004	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1375925	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1375926	1.00[CHB][hapmap]
rs1874952	0.93[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2122419	0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2167143	0.85[CEU][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs28413487	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3755625	0.87[JPT][hapmap]
rs3755627	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs3772231	0.81[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes]
rs3772233	0.94[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs3772236	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3772243	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3821415	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs4680258	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4680259	0.81[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7653024	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs882089	0.93[CEU][hapmap];0.94[JPT][hapmap]
rs9874261	0.88[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156052200-156053400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr3:156052400-156053600	Enhancers	Stomach Mucosa	stomach
3	chr3:156052600-156053400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:156052800-156058200	Weak transcription	Aorta	Aorta
5	chr3:156053000-156064800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:156053200-156061600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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