Variant report

Variant	rs3824739
Chromosome Location	chr10:92681475-92681476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr10:92680641-92681578	A549	lung:	n/a	n/a
2	NR2F2	chr10:92680738-92681525	MCF-7	breast:	n/a	n/a
3	TEAD4	chr10:92680746-92681539	A549	lung:	n/a	n/a
4	ARID3A	chr10:92680332-92681621	HepG2	liver:	n/a	chr10:92680395-92680411
5	TEAD4	chr10:92680672-92681519	A549	lung:	n/a	n/a
6	JUND	chr10:92680511-92682024	SK-N-SH	brain:	n/a	chr10:92681466-92681475
7	POLR2A	chr10:92670067-92681537	HUVEC	blood vessel:	n/a	n/a
8	FOSL2	chr10:92680827-92681502	MCF-7	breast:	n/a	chr10:92681466-92681475
9	CEBPB	chr10:92680740-92681598	A549	lung:	n/a	chr10:92681138-92681149 chr10:92681138-92681151
10	FOXA2	chr10:92680761-92681528	A549	lung:	n/a	n/a
11	GTF2F1	chr10:92680723-92681526	Hela-S3	cervix:	n/a	n/a
12	EP300	chr10:92680630-92681624	SK-N-SH	brain:	n/a	chr10:92681139-92681153
13	RXRA	chr10:92680720-92681549	SK-N-SH	brain:	n/a	n/a
14	MAFK	chr10:92680885-92681478	IMR90	lung:	n/a	n/a
15	SIN3AK20	chr10:92680699-92681550	MCF-7	breast:	n/a	n/a
16	TCF7L2	chr10:92680760-92681481	Hela-S3	cervix:	n/a	n/a
17	JUN	chr10:92680703-92681678	HUVEC	blood vessel:	n/a	chr10:92681466-92681475
18	JUND	chr10:92680722-92681639	SK-N-SH	brain:	n/a	chr10:92681466-92681475
19	EP300	chr10:92680563-92681669	A549	lung:	n/a	chr10:92681139-92681153
20	ESR1	chr10:92680761-92681540	ECC-1	luminal epithelium:	n/a	chr10:92681006-92681021
21	NR3C1	chr10:92680815-92681512	A549	lung:	n/a	chr10:92681020-92681027
22	EP300	chr10:92680585-92681548	Hela-S3	cervix:	n/a	chr10:92681139-92681153
23	POLR2A	chr10:92669947-92681784	HUVEC	blood vessel:	n/a	n/a
24	TCF12	chr10:92680527-92681540	ECC-1	luminal epithelium:	n/a	n/a
25	TCF12	chr10:92681001-92681501	MCF-7	breast:	n/a	n/a
26	POLR2A	chr10:92680703-92681496	HUVEC	blood vessel:	n/a	n/a
27	MAX	chr10:92680567-92681736	A549	lung:	n/a	chr10:92681486-92681497
28	TEAD4	chr10:92680429-92681747	ECC-1	luminal epithelium:	n/a	n/a
29	TFAP2C	chr10:92680823-92681663	Hela-S3	cervix:	n/a	chr10:92681309-92681324
30	FOXM1	chr10:92680709-92681533	ECC-1	luminal epithelium:	n/a	n/a
31	RAD21	chr10:92680791-92681543	A549	lung:	n/a	n/a
32	MAX	chr10:92680644-92681612	A549	lung:	n/a	chr10:92681486-92681497
33	FOXA1	chr10:92680894-92681507	T-47D	breast:	n/a	n/a
34	SP1	chr10:92680635-92681649	A549	lung:	n/a	n/a
35	MAX	chr10:92680589-92681520	ECC-1	luminal epithelium:	n/a	chr10:92681486-92681497
36	FOXM1	chr10:92680692-92681562	MCF-7	breast:	n/a	n/a
37	JUND	chr10:92680840-92681573	Hela-S3	cervix:	n/a	chr10:92681466-92681475
38	SIN3AK20	chr10:92680900-92681517	MCF-7	breast:	n/a	n/a
39	GATA3	chr10:92680768-92681533	A549	lung:	n/a	chr10:92681238-92681254
40	FOSL2	chr10:92680548-92681592	A549	lung:	n/a	chr10:92681466-92681475
41	RCOR1	chr10:92680797-92681660	Hela-S3	cervix:	n/a	n/a
42	PBX3	chr10:92680837-92681485	A549	lung:	n/a	n/a
43	NR2F2	chr10:92680843-92681545	MCF-7	breast:	n/a	n/a
44	STAT3	chr10:92680833-92681588	Hela-S3	cervix:	n/a	chr10:92681431-92681442
45	TEAD4	chr10:92680661-92681610	HepG2	liver:	n/a	n/a
46	RFX5	chr10:92680785-92681588	Hela-S3	cervix:	n/a	n/a
47	JUND	chr10:92680712-92681480	MCF-7	breast:	n/a	chr10:92681466-92681475
48	TCF12	chr10:92680645-92681624	SK-N-SH	brain:	n/a	n/a
49	GATA2	chr10:92679863-92681542	HUVEC	blood vessel:	n/a	chr10:92681238-92681254
50	PBX3	chr10:92680659-92681585	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ANKRD1	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10881850	0.85[CHD][hapmap]
rs11186333	0.81[CHD][hapmap]
rs11186338	0.85[CHD][hapmap]
rs11186343	0.85[CHD][hapmap]
rs11186346	0.85[JPT][hapmap]
rs11186359	0.85[CHD][hapmap]
rs11186360	0.85[CHD][hapmap]
rs11186367	0.85[CHD][hapmap]
rs11527868	0.80[CHD][hapmap]
rs11815049	0.88[CHD][hapmap]
rs12249377	0.81[CHD][hapmap]
rs12255018	0.84[JPT][hapmap]
rs12261011	0.81[CHD][hapmap]
rs12264160	0.81[CHD][hapmap]
rs1891311	0.85[CHD][hapmap];0.85[TSI][hapmap]
rs2901127	0.81[CHD][hapmap]
rs4144422	0.85[CHD][hapmap]
rs4282910	0.81[CHD][hapmap]
rs4586057	0.85[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92648400-92684400	Weak transcription	Aorta	Aorta
2	chr10:92672800-92689000	Weak transcription	Fetal Thymus	thymus
3	chr10:92678400-92682200	Enhancers	NHDF-Ad	bronchial
4	chr10:92678600-92682800	Weak transcription	Dnd41	blood
5	chr10:92678600-92689400	Weak transcription	Fetal Lung	lung
6	chr10:92679600-92681600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:92679800-92681600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:92680200-92682200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr10:92680200-92682600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:92680200-92683200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr10:92680400-92684400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:92680600-92682000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:92680800-92681800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:92680800-92681800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr10:92680800-92681800	Enhancers	HMEC	breast
16	chr10:92680800-92682000	Enhancers	Fetal Muscle Leg	muscle
17	chr10:92680800-92682000	Enhancers	Placenta	Placenta
18	chr10:92680800-92682200	Enhancers	NHLF	lung
19	chr10:92680800-92682600	Weak transcription	Right Ventricle	heart
20	chr10:92680800-92683600	Weak transcription	Right Atrium	heart
21	chr10:92681000-92681600	Flanking Active TSS	A549	lung
22	chr10:92681000-92681800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:92681000-92682000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:92681000-92682000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:92681000-92682000	Enhancers	NH-A	brain
26	chr10:92681000-92682400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
27	chr10:92681000-92682600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr10:92681000-92682800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:92681000-92682800	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr10:92681000-92683400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
31	chr10:92681000-92683800	Weak transcription	Psoas Muscle	Psoas
32	chr10:92681000-92684400	Weak transcription	Left Ventricle	heart
33	chr10:92681000-92689000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr10:92681000-92689000	Weak transcription	Lung	lung
35	chr10:92681200-92681600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
36	chr10:92681200-92682200	Enhancers	Hela-S3	cervix
37	chr10:92681200-92682800	Enhancers	Fetal Heart	heart
38	chr10:92681200-92683000	Enhancers	HSMMtube	muscle
39	chr10:92681200-92690800	Weak transcription	Gastric	stomach
40	chr10:92681400-92681600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr10:92681400-92681600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:92681400-92682000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:92681400-92682000	Enhancers	Osteobl	bone
44	chr10:92681400-92682200	Enhancers	HepG2	liver
45	chr10:92681400-92683000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:92681400-92683000	Enhancers	HUVEC	blood vessel
47	chr10:92681400-92684200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr10:92681400-92685000	Enhancers	Muscle Satellite Cultured Cells	--
49	chr10:92681400-92685000	Enhancers	HSMM	muscle
50	chr10:92681400-92687800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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