Variant report

Variant	rs1891311
Chromosome Location	chr10:92618616-92618617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr10:92618252-92618670	MCF10A-Er-Src	breast:	n/a	chr10:92618277-92618285 chr10:92618317-92618329
2	STAT3	chr10:92618342-92618716	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92618080..92620435-chr10:92621216..92622913,2	K562	blood:
2	chr10:92617446..92619942-chr10:92629114..92632072,2	K562	blood:

Variant related genes	Relation type
HTR7	TF binding region
ENSG00000148688	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10881829	0.91[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10881831	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10881833	0.90[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881834	0.93[ASN][1000 genomes]
rs10881835	0.91[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881841	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10881843	0.97[ASN][1000 genomes]
rs10881845	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10881846	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10881848	0.84[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs10881850	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11186282	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11186292	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11186298	0.91[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186299	0.89[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186305	0.92[ASN][1000 genomes]
rs11186306	0.91[CEU][hapmap];0.91[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186315	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186323	0.93[ASN][1000 genomes]
rs11186333	0.91[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186336	0.95[ASN][1000 genomes]
rs11186338	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[ASN][1000 genomes]
rs11186339	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186343	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186344	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186352	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186358	0.94[ASN][1000 genomes]
rs11186359	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11186360	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11186361	0.94[ASN][1000 genomes]
rs11186367	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11186368	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11498506	0.92[CHB][hapmap];0.83[JPT][hapmap];0.93[ASN][1000 genomes]
rs11498507	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11498662	0.93[ASN][1000 genomes]
rs11527868	0.91[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11815049	0.81[CEU][hapmap]
rs12220866	0.91[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12244538	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12249377	0.92[CHB][hapmap];0.96[CHD][hapmap];0.84[JPT][hapmap];0.95[ASN][1000 genomes]
rs12255018	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12256605	1.00[ASN][1000 genomes]
rs12258938	0.98[ASN][1000 genomes]
rs12261011	0.92[CHB][hapmap];0.96[CHD][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs12264160	0.92[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs1573253	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1592143	0.93[ASN][1000 genomes]
rs17102362	0.94[ASN][1000 genomes]
rs1891312	0.97[ASN][1000 genomes]
rs2901026	1.00[ASN][1000 genomes]
rs2901127	0.89[ASW][hapmap];0.91[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3824739	0.85[CHD][hapmap];0.85[TSI][hapmap]
rs4144422	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4282910	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4284320	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4586057	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs58578719	0.95[ASN][1000 genomes]
rs59257274	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61481895	0.97[ASN][1000 genomes]
rs7082814	0.96[ASN][1000 genomes]
rs7085559	1.00[ASN][1000 genomes]
rs7096568	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs73315609	0.93[ASN][1000 genomes]
rs73315628	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74148885	0.98[ASN][1000 genomes]
rs7478556	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7903584	0.94[ASN][1000 genomes]
rs7916720	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv1815232	chr10:92617295-92618616	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1823335	chr10:92617295-92618616	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1840527	chr10:92617295-92618616	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92614400-92618800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr10:92614400-92619000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
3	chr10:92614800-92619200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
4	chr10:92616800-92618800	Active TSS	NHLF	lung
5	chr10:92618000-92619000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
6	chr10:92618000-92619000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:92618000-92619200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr10:92618000-92619400	Flanking Active TSS	HMEC	breast
9	chr10:92618000-92619600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:92618200-92619000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:92618200-92619200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:92618400-92618800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
13	chr10:92618400-92618800	Enhancers	Hela-S3	cervix
14	chr10:92618400-92618800	Enhancers	NHEK	skin
15	chr10:92618400-92619000	Enhancers	NH-A	brain
16	chr10:92618400-92619200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:92618400-92619400	Enhancers	A549	lung
18	chr10:92618400-92619600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:92618400-92619600	Enhancers	HSMM	muscle
20	chr10:92618400-92620000	Enhancers	HUVEC	blood vessel
21	chr10:92618600-92619000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:92618600-92619000	Enhancers	Osteobl	bone
23	chr10:92618600-92619200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
24	chr10:92618600-92619200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:92618600-92619200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:92618600-92619600	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr10:92618600-92619800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:92618600-92619800	Enhancers	NHDF-Ad	bronchial
29	chr10:92618600-92620000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:92618600-92620200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:92618600-92621600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr10:92618600-92621800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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