Variant report

Variant	rs11186344
Chromosome Location	chr10:92638530-92638531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:92631670..92633200-chr10:92637459..92639232,2	MCF-7	breast:
2	chr10:92630847..92633056-chr10:92637224..92639071,2	MCF-7	breast:
3	chr10:92634169..92636682-chr10:92637980..92640024,2	K562	blood:
4	chr10:92631710..92635669-chr10:92637980..92642007,3	K562	blood:

Variant related genes	Relation type
ENSG00000148688	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10881829	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10881831	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10881833	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881834	0.93[ASN][1000 genomes]
rs10881835	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881841	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10881843	0.97[ASN][1000 genomes]
rs10881845	1.00[ASN][1000 genomes]
rs10881846	0.97[ASN][1000 genomes]
rs10881848	0.97[ASN][1000 genomes]
rs10881850	0.94[ASN][1000 genomes]
rs11186282	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11186292	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11186298	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186299	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186305	0.92[ASN][1000 genomes]
rs11186306	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186315	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186323	0.93[ASN][1000 genomes]
rs11186333	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186336	0.95[ASN][1000 genomes]
rs11186338	1.00[ASN][1000 genomes]
rs11186339	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186346	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186352	1.00[ASN][1000 genomes]
rs11186358	0.94[ASN][1000 genomes]
rs11186359	0.94[ASN][1000 genomes]
rs11186360	0.98[ASN][1000 genomes]
rs11186361	0.94[ASN][1000 genomes]
rs11186367	0.94[ASN][1000 genomes]
rs11186368	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11498506	0.93[ASN][1000 genomes]
rs11498507	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11498662	0.93[ASN][1000 genomes]
rs11527868	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12220866	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12244538	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12249377	0.95[ASN][1000 genomes]
rs12255018	0.97[ASN][1000 genomes]
rs12256605	1.00[ASN][1000 genomes]
rs12258938	0.98[ASN][1000 genomes]
rs12261011	0.93[ASN][1000 genomes]
rs12264160	0.96[ASN][1000 genomes]
rs1573253	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1592143	0.93[ASN][1000 genomes]
rs17102362	0.94[ASN][1000 genomes]
rs1891311	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1891312	0.97[ASN][1000 genomes]
rs2901026	1.00[ASN][1000 genomes]
rs2901127	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4144422	0.97[ASN][1000 genomes]
rs4282910	1.00[ASN][1000 genomes]
rs4284320	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4586057	0.97[ASN][1000 genomes]
rs58578719	0.95[ASN][1000 genomes]
rs59257274	0.82[ASN][1000 genomes]
rs61481895	0.97[ASN][1000 genomes]
rs7082814	0.96[ASN][1000 genomes]
rs7085559	1.00[ASN][1000 genomes]
rs7096568	0.97[ASN][1000 genomes]
rs73315609	0.93[ASN][1000 genomes]
rs73315628	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74148885	0.98[ASN][1000 genomes]
rs7478556	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7903584	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92632400-92647800	Weak transcription	Aorta	Aorta
2	chr10:92632800-92646000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:92632800-92646600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:92632800-92647600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:92632800-92647800	Weak transcription	Gastric	stomach
6	chr10:92632800-92651000	Weak transcription	Psoas Muscle	Psoas
7	chr10:92632800-92663200	Weak transcription	Colonic Mucosa	Colon
8	chr10:92632800-92665400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:92632800-92668000	Weak transcription	Esophagus	oesophagus
10	chr10:92632800-92668200	Weak transcription	Small Intestine	intestine
11	chr10:92633000-92640400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr10:92633000-92640600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr10:92633200-92644000	Weak transcription	NHLF	lung
14	chr10:92633200-92650000	Weak transcription	Fetal Heart	heart
15	chr10:92633600-92646000	Weak transcription	Right Ventricle	heart
16	chr10:92634000-92661400	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr10:92634000-92665400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:92634200-92639800	Strong transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:92634400-92653000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:92634400-92659000	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr10:92634400-92661800	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:92634800-92639600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:92634800-92640000	Strong transcription	Primary B cells from peripheral blood	blood
24	chr10:92634800-92663600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:92635000-92639000	Strong transcription	HepG2	liver
26	chr10:92635000-92656000	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr10:92635200-92638800	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr10:92635200-92639400	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:92635200-92639600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr10:92635200-92641800	Strong transcription	HMEC	breast
31	chr10:92635200-92655000	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr10:92635200-92655000	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr10:92635200-92658800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr10:92635200-92664200	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr10:92635200-92664400	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr10:92635200-92665400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr10:92635200-92665400	Strong transcription	Fetal Thymus	thymus
38	chr10:92635200-92668200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:92635400-92638600	Strong transcription	Brain Inferior Temporal Lobe	brain
40	chr10:92635400-92639000	Strong transcription	Osteobl	bone
41	chr10:92635400-92639400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:92635400-92639600	Strong transcription	Adipose Nuclei	Adipose
43	chr10:92635400-92639600	Strong transcription	Brain Hippocampus Middle	brain
44	chr10:92635400-92639600	Strong transcription	Duodenum Mucosa	Duodenum
45	chr10:92635400-92639600	Strong transcription	Fetal Intestine Large	intestine
46	chr10:92635400-92639600	Strong transcription	Fetal Muscle Trunk	muscle
47	chr10:92635400-92639600	Strong transcription	Fetal Muscle Leg	muscle
48	chr10:92635400-92639600	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr10:92635400-92639600	Strong transcription	Dnd41	blood
50	chr10:92635400-92639600	Strong transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links