Variant report

Variant	rs2901026
Chromosome Location	chr10:92615660-92615661
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10881829	0.85[ASN][1000 genomes]
rs10881831	0.92[ASN][1000 genomes]
rs10881833	0.93[ASN][1000 genomes]
rs10881834	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881835	0.93[ASN][1000 genomes]
rs10881841	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881843	0.97[ASN][1000 genomes]
rs10881845	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881846	0.97[ASN][1000 genomes]
rs10881848	0.97[ASN][1000 genomes]
rs10881850	0.94[ASN][1000 genomes]
rs11186282	0.82[ASN][1000 genomes]
rs11186292	0.85[ASN][1000 genomes]
rs11186298	0.87[ASN][1000 genomes]
rs11186299	0.87[ASN][1000 genomes]
rs11186305	0.92[ASN][1000 genomes]
rs11186306	0.93[ASN][1000 genomes]
rs11186315	0.91[ASN][1000 genomes]
rs11186323	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186333	0.98[ASN][1000 genomes]
rs11186336	0.95[ASN][1000 genomes]
rs11186338	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186339	0.90[ASN][1000 genomes]
rs11186343	1.00[ASN][1000 genomes]
rs11186344	1.00[ASN][1000 genomes]
rs11186346	1.00[ASN][1000 genomes]
rs11186352	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186358	0.94[ASN][1000 genomes]
rs11186359	0.94[ASN][1000 genomes]
rs11186360	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186361	0.94[ASN][1000 genomes]
rs11186367	0.94[ASN][1000 genomes]
rs11186368	0.98[ASN][1000 genomes]
rs11498506	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11498507	0.93[ASN][1000 genomes]
rs11498662	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11527868	0.93[ASN][1000 genomes]
rs12220866	0.87[ASN][1000 genomes]
rs12244538	0.94[ASN][1000 genomes]
rs12249377	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12255018	0.97[ASN][1000 genomes]
rs12256605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258938	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12261011	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12264160	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1573253	0.85[ASN][1000 genomes]
rs1592143	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17102362	0.94[ASN][1000 genomes]
rs1891311	1.00[ASN][1000 genomes]
rs1891312	0.97[ASN][1000 genomes]
rs2901127	0.95[ASN][1000 genomes]
rs4144422	0.97[ASN][1000 genomes]
rs4282910	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4284320	0.85[ASN][1000 genomes]
rs4586057	0.97[ASN][1000 genomes]
rs58578719	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59257274	0.82[ASN][1000 genomes]
rs61481895	0.97[ASN][1000 genomes]
rs7082814	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7085559	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096568	0.97[ASN][1000 genomes]
rs73315609	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73315628	0.98[ASN][1000 genomes]
rs74148885	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7478556	0.82[ASN][1000 genomes]
rs7903584	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92597800-92616200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:92614400-92615800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr10:92614400-92618600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr10:92614400-92618800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
5	chr10:92614400-92619000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
6	chr10:92614800-92616000	Active TSS	H1 Cell Line	embryonic stem cell
7	chr10:92614800-92616000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:92614800-92616000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:92614800-92618600	Bivalent/Poised TSS	Fetal Brain Female	brain
10	chr10:92614800-92619200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr10:92615000-92615800	Enhancers	Osteobl	bone
12	chr10:92615000-92616400	Flanking Active TSS	NHEK	skin
13	chr10:92615000-92618200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
14	chr10:92615200-92616000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:92615200-92616200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:92615200-92618200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:92615400-92616200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:92615400-92616800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:92615400-92617400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
20	chr10:92615400-92618600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr10:92615600-92615800	Active TSS	Muscle Satellite Cultured Cells	--
22	chr10:92615600-92615800	Active TSS	HMEC	breast
23	chr10:92615600-92616000	Active TSS	Fetal Stomach	stomach

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