Variant report

Variant	rs10881850
Chromosome Location	chr10:92670328-92670329
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:92669987..92672080-chr10:93010205..93012615,2	K562	blood:
2	chr10:92668835..92671197-chr10:92756452..92758146,2	K562	blood:
3	chr10:92667885..92670483-chr10:92979260..92981287,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273124	Chromatin interaction
ENSG00000180628	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10881829	0.92[CHB][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs10881831	0.86[ASN][1000 genomes]
rs10881833	0.91[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs10881834	0.87[ASN][1000 genomes]
rs10881835	0.92[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs10881841	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10881843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881845	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10881846	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881848	0.85[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186292	0.82[ASN][1000 genomes]
rs11186298	0.92[CHB][hapmap];0.93[CHD][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs11186299	0.92[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs11186305	0.86[ASN][1000 genomes]
rs11186306	0.92[CHB][hapmap];0.87[ASN][1000 genomes]
rs11186315	0.85[ASN][1000 genomes]
rs11186323	0.87[ASN][1000 genomes]
rs11186333	0.92[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs11186336	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186338	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11186339	0.84[ASN][1000 genomes]
rs11186343	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11186344	0.94[ASN][1000 genomes]
rs11186346	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11186352	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11186358	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186359	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186360	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11186361	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186367	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186368	0.97[ASN][1000 genomes]
rs11498506	0.92[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs11498507	0.87[ASN][1000 genomes]
rs11498662	0.87[ASN][1000 genomes]
rs11527868	0.92[CHB][hapmap];0.96[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs12220866	0.92[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs12244538	0.89[ASN][1000 genomes]
rs12249377	0.92[CHB][hapmap];0.96[CHD][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs12255018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12256605	0.94[ASN][1000 genomes]
rs12258938	0.92[ASN][1000 genomes]
rs12261011	0.92[CHB][hapmap];0.96[CHD][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs12264160	0.92[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs1573253	0.82[ASN][1000 genomes]
rs1592143	0.87[ASN][1000 genomes]
rs17102362	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1891311	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1891312	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2901026	0.94[ASN][1000 genomes]
rs2901127	0.92[CHB][hapmap];0.96[CHD][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs3824739	0.85[CHD][hapmap]
rs4144422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4282910	0.89[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4284320	0.82[ASN][1000 genomes]
rs4586057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58578719	0.90[ASN][1000 genomes]
rs61481895	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7082814	0.95[ASN][1000 genomes]
rs7085559	0.94[ASN][1000 genomes]
rs7096568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73315609	0.87[ASN][1000 genomes]
rs73315628	0.92[ASN][1000 genomes]
rs74148885	0.92[ASN][1000 genomes]
rs7903584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10881850	IFIT1	cis	parietal	SCAN

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92636800-92671600	Weak transcription	Fetal Brain Male	brain
2	chr10:92640800-92671600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:92646800-92676800	Weak transcription	Right Ventricle	heart
4	chr10:92648400-92684400	Weak transcription	Aorta	Aorta
5	chr10:92648600-92671600	Weak transcription	Fetal Intestine Small	intestine
6	chr10:92648600-92675000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:92648600-92679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:92648600-92681000	Weak transcription	Pancreas	Pancrea
9	chr10:92649200-92675200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:92649600-92671200	Weak transcription	Hela-S3	cervix
11	chr10:92651400-92675000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:92651600-92671600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:92652400-92679400	Weak transcription	Psoas Muscle	Psoas
14	chr10:92653400-92671600	Weak transcription	Brain Angular Gyrus	brain
15	chr10:92653600-92671600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:92653600-92671800	Weak transcription	HSMMtube	muscle
17	chr10:92653800-92671400	Weak transcription	Brain Hippocampus Middle	brain
18	chr10:92654000-92670600	Weak transcription	Ovary	ovary
19	chr10:92654400-92672200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:92654600-92670400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr10:92654600-92675000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:92654800-92671600	Weak transcription	Fetal Kidney	kidney
23	chr10:92654800-92674000	Weak transcription	Fetal Heart	heart
24	chr10:92656400-92671400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr10:92656400-92678400	Weak transcription	NHDF-Ad	bronchial
26	chr10:92657200-92671600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr10:92658200-92676800	Weak transcription	NH-A	brain
28	chr10:92658800-92671600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:92659600-92671600	Weak transcription	HepG2	liver
30	chr10:92660600-92671600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr10:92660800-92671600	Weak transcription	Osteobl	bone
32	chr10:92661000-92671600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:92661000-92680000	Weak transcription	Placenta	Placenta
34	chr10:92661200-92671600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr10:92661400-92671200	Weak transcription	Brain Anterior Caudate	brain
36	chr10:92661400-92671600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:92662600-92671600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:92663200-92671400	Weak transcription	Primary B cells from peripheral blood	blood
39	chr10:92663400-92671600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr10:92663400-92671600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr10:92663400-92671600	Weak transcription	Liver	Liver
42	chr10:92663400-92671600	Weak transcription	Brain Germinal Matrix	brain
43	chr10:92663400-92671600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr10:92663400-92671600	Weak transcription	Brain Substantia Nigra	brain
45	chr10:92663400-92671600	Weak transcription	Colon Smooth Muscle	Colon
46	chr10:92663400-92679600	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr10:92663600-92671400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr10:92663600-92671600	Weak transcription	HMEC	breast
49	chr10:92663600-92673400	Weak transcription	Left Ventricle	heart
50	chr10:92664200-92671800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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